RNA id: TCONS_00034757


Basic Information

Item Value
RNA id TCONS_00034757
length 1668
RNA type mRNA
GC content 0.39
exon number 11
gene id XLOC_017488
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 35255403 ~ 35298023 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttgttttcagactCACGCACACGTGGATGCTCTAAAAGGAAGCATACGTTCTCCTCCAGAAAAGGTTTCGCTGGAATGGGTAATCTTCTAAAAGTCCTTACAAGGGAAATAGAGAACTATCCACATTTTTTCCTGGACTTTGAAAacgcacaaccaacagacTGTGAGAGAGAAGTGTGGAACCAGGTGAATGCTGTTCTCCAGGAGTCTGAGAGCATCCTCTCTGGCCTTCAAGCCTACAAGGGTGCAGGCCAGGAAATACGAGATGCAATTCAGAATCCTAACGACATGCTCCTTCAGGAAAGGGCATGGAACTCTGTGTGTCCCCTTGTCATCCGGCTAAAGAAGTTCTATGCGTTTTCATTGAAACTAGAGCAAGCGCTGCAGAGTCTTTTGGAGTCTCTGACGTGTCCACCATACACTCCCACTCAGCACCTGGAGAGAGAGCAGGCCCTCGCTAAACAGTTTGCTGAAATCCTGCATTTCACCCTCCGCTTTGATGAGCTTAAGATGAGAATACCAGCCATCCAGAATGACTTCAGCTACTACAGAAGAACAATCAGTCGAAACCGATTAAACAACATGAATCTTGATATTGAAAATGAGGTCAATAATGAAATGGCAAACAGAATGTCTCTGTTCTATGCTGAAGCCACGCCGATGTTGAAGACCTTGAGCACAGCAACAACAAACTTTGTGACAGAGAATAAGACATTACCTCTTGAGAACACCACAGACTGCCTGAGCACTATGGCAAGTGTTTGCAAGGTCATGCTGGAGACACCAGAATACACAAGTCGATTCAACAGTGAAGatacacttttattttgtatgaggGTGATGGTGGGGGTTATTATCCTTTATGACCATGTGCATCCAAATGGTGCCTTCAACAAATCCTCAAAAATCGATATGAAAGGATGCATTAAGGTGTTAAAAGATCAGCCTGCAGATAATGTGGAAGGTCTCCTTAATGCCCTCAAGTTCACCACAAAACACCTGAATGATGAGTCCACTCCAAAAAATATCAGAACAATGCTCCAGTAATGGTTTTTAAGTGAATCGGGTCAATATCCTGACCTCTAAAGATGTATATGTTTACAATTATTTAAGGACTTGATGTTAATACTTGGGTGTATTTACATAATCATTCCCTCCGAGTaactgcaatgtaaaaaaaaaaaaaaagcagacctTTATTCTAAACAAACTGCCTATACTGTTGTTGACAGAAGcacaaatgaagaaaaaaaccAAGCAGCCTTATACAAATTCATGGAAAAAAGAAATCATCTGCcattttctttcaaatatataacagTGATCATGTTAACCAAAGGGGCTAAAACATTGGTTGTGAGTTACAGTGAAATCATATTGGCTAAAGCCTTGTCAATATTGAATGAGTAAAGTGTGTTGGTATGGTTgtgcttttgtattttgtaaggTAATGACAAGAAaagataagagaaaaaaaaactatgtaaaataatctgttgtttttgttcatttcCCTAAATCTGTGGTCCGACTGAAGGTGGAGATcagcattttttttgtcattatgtgATGAGTGCTCTTTGTTTTTTTGTGCCTCTTTGTTTCTAACACATTCGATATTCATCAATACagctttaaaatctaaaataaaattgacattttgaTT

Function

GO:

id name namespace
GO:0048538 thymus development biological_process
GO:0045580 regulation of T cell differentiation biological_process
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031002-50 Acts upstream of or within regulation of T cell differentiation and thymus development. Predicted to be located in membrane. Is expressed in several structures, including adaxial cell; digestive system; musculature system; sensory system; and trunk. Orthologous to human CYRIA (CYFIP related Rac1 interactor A).

Ensembl:

ensembl_id ENSDART00000187199

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034746 lncRNA upstream 104840 35175827 ~ 35177842 (+) True XLOC_017486
TCONS_00036622 lncRNA upstream 268180 35012634 ~ 35014502 (+) True XLOC_017484
TCONS_00034741 lncRNA upstream 296900 34985123 ~ 34985782 (+) True XLOC_017483
TCONS_00036621 lncRNA upstream 316689 34962154 ~ 34965993 (+) True XLOC_017482
TCONS_00036620 lncRNA upstream 326642 34933224 ~ 34956040 (+) False XLOC_017481
TCONS_00034764 lncRNA downstream 135174 35433194 ~ 35434917 (+) True XLOC_017491
TCONS_00036623 lncRNA downstream 152256 35450276 ~ 35459449 (+) True XLOC_017492
TCONS_00036624 lncRNA downstream 175285 35473305 ~ 35481584 (+) False XLOC_017493
TCONS_00034769 lncRNA downstream 182759 35480779 ~ 35481584 (+) True XLOC_017493
TCONS_00036625 lncRNA downstream 414582 35712602 ~ 35809588 (+) False XLOC_017495
TCONS_00034748 mRNA upstream 28041 35208068 ~ 35254641 (+) False XLOC_017487
TCONS_00034749 mRNA upstream 28052 35247410 ~ 35254630 (+) False XLOC_017487
TCONS_00034750 mRNA upstream 28491 35247854 ~ 35254191 (+) True XLOC_017487
TCONS_00034747 mRNA upstream 30546 35208020 ~ 35252136 (+) False XLOC_017487
TCONS_00034744 mRNA upstream 76402 35085224 ~ 35206280 (+) False XLOC_017486
TCONS_00034761 mRNA downstream 84462 35382482 ~ 35429737 (+) True XLOC_017489
TCONS_00034763 mRNA downstream 135172 35433192 ~ 35437940 (+) False XLOC_017491
TCONS_00034765 mRNA downstream 140280 35438300 ~ 35462226 (+) False XLOC_017492
TCONS_00034766 mRNA downstream 140398 35438418 ~ 35450967 (+) False XLOC_017492
TCONS_00034767 mRNA downstream 147442 35445462 ~ 35461674 (+) False XLOC_017492
TCONS_00034743 other upstream 218701 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034740 other upstream 327422 34943371 ~ 34955260 (+) True XLOC_017481
TCONS_00034653 other upstream 2812228 32466886 ~ 32470454 (+) True XLOC_017433
TCONS_00034652 other upstream 2850215 32408887 ~ 32432467 (+) True XLOC_017432
TCONS_00034641 other upstream 3559185 31722252 ~ 31723497 (+) True XLOC_017426
TCONS_00034760 other downstream 84418 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034762 other downstream 124678 35422698 ~ 35422827 (+) True XLOC_017490
TCONS_00034779 other downstream 982028 36280048 ~ 36280164 (+) True XLOC_017499
TCONS_00034815 other downstream 2522970 37820990 ~ 37826136 (+) False XLOC_017519
TCONS_00034825 other downstream 2815777 38113797 ~ 38119890 (+) True XLOC_017523

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU537987 True 1383 lncRNA 0.34 4 CI01000325 10386043 ~ 10388152 (-)