RNA id: TCONS_00034766


Basic Information

Item Value
RNA id TCONS_00034766
length 355
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_017492
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 35438300 ~ 35462226 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGAAAGTACCAGTGCTGGATCTAGTTAGGCGTCTGTTAATTTGATTGTTTAGTTGTGGGATGTCGGTTTGTTTCTGTGATTTTCATATTGCTGTATCTTTGTTGTTCGCTAAAACTACGCTTGACTGGGGAAAAATCCCTTTTCAGTTCGCTTACCTTTGATTTGCTTCGACGTTTGATGAGAGGCCAAGATGTCGTTGGTCAACGCTGAGTTCAGAGCGGAATTTAACCTGAAGTGATACTCTGACATTGGAGCAAGTGAGTCACTGAAGTAATCACAATGTGCTCCATTCCGGGACTCCCATCAAAAGactTGGGTTGTTTAAGACGAGCAACTGAAAAGAAGCCTGTTGG

Function

GO:

id name namespace
GO:0048477 oogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0007281 germ cell development biological_process
GO:0007283 spermatogenesis biological_process
GO:1905879 regulation of oogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:1903863 P granule assembly biological_process
GO:0033391 chromatoid body cellular_component
GO:0043186 P granule cellular_component
GO:0060293 germ plasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0032019 mitochondrial cloud cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-210 Involved in P granule assembly; regulation of oogenesis; and spermatogenesis. Located in P granule; chromatoid body; and mitochondrial cloud. Orthologous to human TDRD6 (tudor domain containing 6).

Ensembl:

ensembl_id ENSDART00000153249

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034764 lncRNA upstream 3501 35433194 ~ 35434917 (+) True XLOC_017491
TCONS_00034759 lncRNA upstream 140876 35293205 ~ 35297542 (+) True XLOC_017488
TCONS_00034758 lncRNA upstream 141451 35290834 ~ 35296967 (+) False XLOC_017488
TCONS_00034755 lncRNA upstream 155000 35279996 ~ 35283418 (+) False XLOC_017488
TCONS_00034746 lncRNA upstream 260576 35175827 ~ 35177842 (+) True XLOC_017486
TCONS_00036624 lncRNA downstream 22338 35473305 ~ 35481584 (+) False XLOC_017493
TCONS_00034769 lncRNA downstream 29812 35480779 ~ 35481584 (+) True XLOC_017493
TCONS_00036625 lncRNA downstream 261635 35712602 ~ 35809588 (+) False XLOC_017495
TCONS_00036398 lncRNA downstream 261891 35712858 ~ 35827205 (+) False XLOC_017495
TCONS_00034772 lncRNA downstream 261917 35712884 ~ 35759754 (+) False XLOC_017495
TCONS_00034763 mRNA upstream 478 35433192 ~ 35437940 (+) False XLOC_017491
TCONS_00034761 mRNA upstream 8681 35382482 ~ 35429737 (+) True XLOC_017489
TCONS_00034753 mRNA upstream 140395 35279968 ~ 35298023 (+) False XLOC_017488
TCONS_00034768 mRNA downstream 22321 35473288 ~ 35481584 (+) False XLOC_017493
TCONS_00034770 mRNA downstream 33103 35484070 ~ 35496136 (+) False XLOC_017494
TCONS_00034771 mRNA downstream 33103 35484070 ~ 35496459 (+) True XLOC_017494
TCONS_00034773 mRNA downstream 406432 35857399 ~ 35980452 (+) True XLOC_017496
TCONS_00034774 mRNA downstream 547106 35998073 ~ 36036696 (+) False XLOC_017497
TCONS_00034762 other upstream 15591 35422698 ~ 35422827 (+) True XLOC_017490
TCONS_00034760 other upstream 55801 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034756 other upstream 149447 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034743 other upstream 374437 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034740 other upstream 483158 34943371 ~ 34955260 (+) True XLOC_017481
TCONS_00034779 other downstream 829081 36280048 ~ 36280164 (+) True XLOC_017499
TCONS_00034815 other downstream 2370023 37820990 ~ 37826136 (+) False XLOC_017519
TCONS_00034825 other downstream 2662830 38113797 ~ 38119890 (+) True XLOC_017523
TCONS_00034845 other downstream 3169699 38620666 ~ 38648890 (+) False XLOC_017535
TCONS_00034847 other downstream 3169767 38620734 ~ 38633460 (+) True XLOC_017535

Expression Profile

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