RNA id: TCONS_00020271


Basic Information

Item Value
RNA id TCONS_00020271
length 494
lncRNA type retained_intron
GC content 0.51
exon number 4
gene id XLOC_010256
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 47428721 ~ 47450004 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCTCCGCTGTCAGTGTGTATGATCTGACATTAACCGTCATGAGCTCCAGTCCGGGTCCGGGCTCTCCTGTACCCCTGACCCCCAGCCTGCAGCGGCTCTTCAGTCATGTGAGGGTGGAGAATCTGATAGCAGGACTTAGTGGAGGAgttttgtccacactggcgctCCATCCACTCGACCTGGTCAAAATCAGATTTGCAGTGAGTGATGGGCTTGACGTGAGGCCTAAATACAGTGGCATTGTGCACTGCATGAAGAGCATCTGGCATCAGGAGGGCTTCCGGGGCCTTTATCAAGGAGTCACCCCCAATATCTGGGGTGCTGGAGCTTCGTGGGGGCTCTACTTCTTCTTTTACAATGCGATCAAAGGCTACAACAAGGAGACCCGGCAGATAGAACTGACTGCAACTGAACATCTGCTGTCAGCAGCAGTAGCAGGTCAGTATCACACTCAGGACATTTGGattggcaataataataataataataataa

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015230 FAD transmembrane transporter activity molecular_function
GO:0008517 folic acid transmembrane transporter activity molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-39 Predicted to enable FAD transmembrane transporter activity and folic acid transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in anterior neural tube and optic cup. Orthologous to human SLC25A32 (solute carrier family 25 member 32).

Ensembl:

ensembl_id ENSDART00000131576

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021753 lncRNA upstream 39411 47383795 ~ 47389378 (+) False XLOC_010255
TCONS_00021752 lncRNA upstream 39411 47383795 ~ 47389378 (+) True XLOC_010255
TCONS_00022036 lncRNA upstream 598552 46826588 ~ 46830237 (+) True XLOC_010249
TCONS_00022035 lncRNA upstream 631463 46796426 ~ 46797326 (+) True XLOC_010247
TCONS_00021751 lncRNA upstream 634617 46791221 ~ 46794172 (+) True XLOC_010246
TCONS_00021754 lncRNA downstream 333308 47764225 ~ 47764819 (+) True XLOC_010257
TCONS_00021755 lncRNA downstream 567915 47998832 ~ 47999411 (+) True XLOC_010258
TCONS_00021756 lncRNA downstream 1237397 48668314 ~ 48677034 (+) False XLOC_010264
TCONS_00020281 lncRNA downstream 1240427 48671344 ~ 48677034 (+) False XLOC_010264
TCONS_00020283 lncRNA downstream 1240440 48671357 ~ 48677034 (+) False XLOC_010264
TCONS_00020268 mRNA upstream 84642 47308856 ~ 47344147 (+) True XLOC_010254
TCONS_00020267 mRNA upstream 196643 47207691 ~ 47232146 (+) True XLOC_010253
TCONS_00020266 mRNA upstream 224488 47203422 ~ 47204301 (+) True XLOC_010252
TCONS_00020263 mRNA upstream 250655 46995398 ~ 47178134 (+) False XLOC_010250
TCONS_00020275 mRNA downstream 1029956 48460873 ~ 48573510 (+) True XLOC_010262
TCONS_00020276 mRNA downstream 1185303 48616220 ~ 48643191 (+) False XLOC_010263
TCONS_00020277 mRNA downstream 1185380 48616297 ~ 48643180 (+) False XLOC_010263
TCONS_00020278 mRNA downstream 1195863 48626780 ~ 48643172 (+) False XLOC_010263
TCONS_00020279 mRNA downstream 1200495 48631412 ~ 48641181 (+) True XLOC_010263
TCONS_00020265 other upstream 416332 47012341 ~ 47012457 (+) True XLOC_010251
TCONS_00020229 other upstream 1761937 45666735 ~ 45666852 (+) True XLOC_010222
TCONS_00020228 other upstream 1840459 45588214 ~ 45588330 (+) True XLOC_010221
TCONS_00020217 other upstream 2723635 44704372 ~ 44705154 (+) True XLOC_010213
TCONS_00020216 other upstream 2740854 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020272 other downstream 592376 48023293 ~ 48023408 (+) True XLOC_010259
TCONS_00020273 other downstream 727392 48158309 ~ 48158423 (+) True XLOC_010260
TCONS_00020274 other downstream 826096 48257013 ~ 48257130 (+) True XLOC_010261
TCONS_00020297 other downstream 2116854 49547771 ~ 49547886 (+) True XLOC_010272
TCONS_00020308 other downstream 2809406 50240323 ~ 50254974 (+) True XLOC_010278

Expression Profile

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