RNA id: TCONS_00021754


Basic Information

Item Value
RNA id TCONS_00021754
length 595
lncRNA type intronic
GC content 0.36
exon number 1
gene id XLOC_010257
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 47764225 ~ 47764819 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAATAAAAGCAAAAACTTGGTATTTTGcctgtgtctctttaaatgcaaatgagctgctgatcCCCGCCTCCTTTCAGAAGAGGTTAGAGCCTTTACAGCATGTGTCTTACAGATTCTGCTTAAAATTGATCTTACGTGACATTGCAGTTCTTCatcatcaatgattttttttctagatTGTTTTATCTAAAAACACAACTTGGCTTAAATCTTGGTTCAAACATGTTTTGATAAGTTTAAAGGTACGATAATGCTGATAAGAAAATGATTTACAGCACTATTTATGCGGCTCTGTGTGAGTATCAACCAACctatctaactgagctactcagGTCTACAAGTTGGGTTGGTTTTGTTATCTTTATCAGTCAACATACTGTATGCCATGCTTTGATTGTTTCCATGTATTTGCGTTTACATGTTTCTACATACTCTcatgctgatattttctcagaattgcTCTGATATGTTTTATCGCAGttggtcaaaccatgattttttatAGTTTTAGACTTGTGGATACCAgtctacaaagtcacacacgagctggatattattgatattCTTCAGTGCGTGTGTTACATTCCGGGTCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020271 lncRNA upstream 333308 47428789 ~ 47430917 (+) True XLOC_010256
TCONS_00021753 lncRNA upstream 374847 47383795 ~ 47389378 (+) False XLOC_010255
TCONS_00021752 lncRNA upstream 374847 47383795 ~ 47389378 (+) True XLOC_010255
TCONS_00022036 lncRNA upstream 933988 46826588 ~ 46830237 (+) True XLOC_010249
TCONS_00022035 lncRNA upstream 966899 46796426 ~ 46797326 (+) True XLOC_010247
TCONS_00021755 lncRNA downstream 234013 47998832 ~ 47999411 (+) True XLOC_010258
TCONS_00021756 lncRNA downstream 903495 48668314 ~ 48677034 (+) False XLOC_010264
TCONS_00020281 lncRNA downstream 906525 48671344 ~ 48677034 (+) False XLOC_010264
TCONS_00020283 lncRNA downstream 906538 48671357 ~ 48677034 (+) False XLOC_010264
TCONS_00022037 lncRNA downstream 906541 48671360 ~ 48677034 (+) False XLOC_010264
TCONS_00020270 mRNA upstream 314221 47428735 ~ 47450004 (+) False XLOC_010256
TCONS_00020269 mRNA upstream 314314 47428721 ~ 47449911 (+) False XLOC_010256
TCONS_00020268 mRNA upstream 420078 47308856 ~ 47344147 (+) True XLOC_010254
TCONS_00020267 mRNA upstream 532079 47207691 ~ 47232146 (+) True XLOC_010253
TCONS_00020266 mRNA upstream 559924 47203422 ~ 47204301 (+) True XLOC_010252
TCONS_00020275 mRNA downstream 696054 48460873 ~ 48573510 (+) True XLOC_010262
TCONS_00020276 mRNA downstream 851401 48616220 ~ 48643191 (+) False XLOC_010263
TCONS_00020277 mRNA downstream 851478 48616297 ~ 48643180 (+) False XLOC_010263
TCONS_00020278 mRNA downstream 861961 48626780 ~ 48643172 (+) False XLOC_010263
TCONS_00020279 mRNA downstream 866593 48631412 ~ 48641181 (+) True XLOC_010263
TCONS_00020265 other upstream 751768 47012341 ~ 47012457 (+) True XLOC_010251
TCONS_00020229 other upstream 2097373 45666735 ~ 45666852 (+) True XLOC_010222
TCONS_00020228 other upstream 2175895 45588214 ~ 45588330 (+) True XLOC_010221
TCONS_00020217 other upstream 3059071 44704372 ~ 44705154 (+) True XLOC_010213
TCONS_00020216 other upstream 3076290 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020272 other downstream 258474 48023293 ~ 48023408 (+) True XLOC_010259
TCONS_00020273 other downstream 393490 48158309 ~ 48158423 (+) True XLOC_010260
TCONS_00020274 other downstream 492194 48257013 ~ 48257130 (+) True XLOC_010261
TCONS_00020297 other downstream 1782952 49547771 ~ 49547886 (+) True XLOC_010272
TCONS_00020308 other downstream 2475504 50240323 ~ 50254974 (+) True XLOC_010278

Expression Profile

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