Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00020277 |
| length | 3326 |
| RNA type | mRNA |
| GC content | 0.38 |
| exon number | 9 |
| gene id | XLOC_010263 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 48616220 ~ 48643191 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048741 | skeletal muscle fiber development | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0055007 | cardiac muscle cell differentiation | biological_process |
| GO:0009887 | animal organ morphogenesis | biological_process |
| GO:0048568 | embryonic organ development | biological_process |
| GO:0003007 | heart morphogenesis | biological_process |
| GO:0048666 | neuron development | biological_process |
| GO:0001654 | eye development | biological_process |
| GO:0007420 | brain development | biological_process |
| GO:0030901 | midbrain development | biological_process |
| GO:0060059 | embryonic retina morphogenesis in camera-type eye | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ko03000 | Transcription factors |
| id | description |
|---|---|
| ZDB-GENE-000405-5 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within animal organ development. Predicted to be located in nucleus. Orthologous to human PBX2 (PBX homeobox 2). |
| ensembl_id | ENSDART00000130045 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00021755 | lncRNA | upstream | 616886 | 47998832 ~ 47999411 (+) | True | XLOC_010258 |
| TCONS_00021754 | lncRNA | upstream | 851478 | 47764225 ~ 47764819 (+) | True | XLOC_010257 |
| TCONS_00020271 | lncRNA | upstream | 1185380 | 47428789 ~ 47430917 (+) | True | XLOC_010256 |
| TCONS_00021753 | lncRNA | upstream | 1226919 | 47383795 ~ 47389378 (+) | False | XLOC_010255 |
| TCONS_00021756 | lncRNA | downstream | 25134 | 48668314 ~ 48677034 (+) | False | XLOC_010264 |
| TCONS_00020281 | lncRNA | downstream | 28164 | 48671344 ~ 48677034 (+) | False | XLOC_010264 |
| TCONS_00020283 | lncRNA | downstream | 28177 | 48671357 ~ 48677034 (+) | False | XLOC_010264 |
| TCONS_00022037 | lncRNA | downstream | 28180 | 48671360 ~ 48677034 (+) | False | XLOC_010264 |
| TCONS_00020280 | lncRNA | downstream | 28280 | 48671460 ~ 48677034 (+) | False | XLOC_010264 |
| TCONS_00020275 | mRNA | upstream | 42787 | 48460873 ~ 48573510 (+) | True | XLOC_010262 |
| TCONS_00020270 | mRNA | upstream | 1166293 | 47428735 ~ 47450004 (+) | False | XLOC_010256 |
| TCONS_00020269 | mRNA | upstream | 1166386 | 47428721 ~ 47449911 (+) | False | XLOC_010256 |
| TCONS_00020268 | mRNA | upstream | 1272150 | 47308856 ~ 47344147 (+) | True | XLOC_010254 |
| TCONS_00020267 | mRNA | upstream | 1384151 | 47207691 ~ 47232146 (+) | True | XLOC_010253 |
| TCONS_00020284 | mRNA | downstream | 35475 | 48678655 ~ 48705831 (+) | False | XLOC_010265 |
| TCONS_00020285 | mRNA | downstream | 39129 | 48682309 ~ 48708045 (+) | True | XLOC_010265 |
| TCONS_00020286 | mRNA | downstream | 70868 | 48714048 ~ 48747788 (+) | False | XLOC_010266 |
| TCONS_00020287 | mRNA | downstream | 70898 | 48714078 ~ 48725396 (+) | False | XLOC_010266 |
| TCONS_00020288 | mRNA | downstream | 86767 | 48729947 ~ 48746341 (+) | True | XLOC_010266 |
| TCONS_00020274 | other | upstream | 359167 | 48257013 ~ 48257130 (+) | True | XLOC_010261 |
| TCONS_00020273 | other | upstream | 457874 | 48158309 ~ 48158423 (+) | True | XLOC_010260 |
| TCONS_00020272 | other | upstream | 592889 | 48023293 ~ 48023408 (+) | True | XLOC_010259 |
| TCONS_00020265 | other | upstream | 1603840 | 47012341 ~ 47012457 (+) | True | XLOC_010251 |
| TCONS_00020229 | other | upstream | 2949445 | 45666735 ~ 45666852 (+) | True | XLOC_010222 |
| TCONS_00020297 | other | downstream | 904591 | 49547771 ~ 49547886 (+) | True | XLOC_010272 |
| TCONS_00020308 | other | downstream | 1597143 | 50240323 ~ 50254974 (+) | True | XLOC_010278 |
| TCONS_00020312 | other | downstream | 1863996 | 50507176 ~ 50507295 (+) | True | XLOC_010284 |
| TCONS_00020313 | other | downstream | 2097800 | 50740980 ~ 50803345 (+) | False | XLOC_010281 |
| TCONS_00020323 | other | downstream | 2538891 | 51182071 ~ 51183994 (+) | True | XLOC_010292 |
