RNA id: TCONS_00020279


Basic Information

Item Value
RNA id TCONS_00020279
length 671
RNA type mRNA
GC content 0.44
exon number 4
gene id XLOC_010263
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 48616220 ~ 48643191 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCCAATCTGTATGCCATGAAGACAGCCTTAGGGGCGACACAGAGCGAAGATTCACCCCACACTCCAAACTCCACTGGCTCAGGGTCGTTCTCTCTGTCAGGATCAGCTGACTGCTTTCTAGGGGTTCCACCAATGAACGGCGAGCAGCCTCCGTATCACATGGGAGCTCAGGACGCTCAATCGCGCTTCTCAGAAAGACTGTATATTACCAGAGAGAGCCGGACTAATGGTAACTGGCAGGAGCAGAACTCGCCGCCGTCCGCTGCTTCACCCGGAACTGATCACTCCGTCGACTCAGACTGATGACGTCCACCTCACAGACACGAAAGAATGATGCTCTCTCTTCTACCCAACTGCAGATTTACTTTTCTTCTTAGTTTTATTTTCGTTGGACTTCACGTCGAGCCTCATTCATGAAGCAGAGTTTTACATGTAGATCCTTTATAAATGTATCCTTATTACATTTAATGCAATCATTTACATAAGAAAAGGCCTTGTTTATGAAGCATGTAAATGTGTAAACTGCTTGTAAAATTGCTAAACGACAGTTTAAGCCAAACTATTATTtggaataattttgtttttaacccGTTTATAGGACACTCATTGAAATACTCGTCAGGAAAAATCCTGGAGCGTCACTaggggttattattattaatttttaagt

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0003007 heart morphogenesis biological_process
GO:0048666 neuron development biological_process
GO:0001654 eye development biological_process
GO:0007420 brain development biological_process
GO:0030901 midbrain development biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-000405-5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within animal organ development. Predicted to be located in nucleus. Orthologous to human PBX2 (PBX homeobox 2).

Ensembl:

ensembl_id ENSDART00000154273

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021755 lncRNA upstream 632001 47998832 ~ 47999411 (+) True XLOC_010258
TCONS_00021754 lncRNA upstream 866593 47764225 ~ 47764819 (+) True XLOC_010257
TCONS_00020271 lncRNA upstream 1200495 47428789 ~ 47430917 (+) True XLOC_010256
TCONS_00021753 lncRNA upstream 1242034 47383795 ~ 47389378 (+) False XLOC_010255
TCONS_00021756 lncRNA downstream 27133 48668314 ~ 48677034 (+) False XLOC_010264
TCONS_00020281 lncRNA downstream 30163 48671344 ~ 48677034 (+) False XLOC_010264
TCONS_00020283 lncRNA downstream 30176 48671357 ~ 48677034 (+) False XLOC_010264
TCONS_00022037 lncRNA downstream 30179 48671360 ~ 48677034 (+) False XLOC_010264
TCONS_00020280 lncRNA downstream 30279 48671460 ~ 48677034 (+) False XLOC_010264
TCONS_00020275 mRNA upstream 57902 48460873 ~ 48573510 (+) True XLOC_010262
TCONS_00020270 mRNA upstream 1181408 47428735 ~ 47450004 (+) False XLOC_010256
TCONS_00020269 mRNA upstream 1181501 47428721 ~ 47449911 (+) False XLOC_010256
TCONS_00020268 mRNA upstream 1287265 47308856 ~ 47344147 (+) True XLOC_010254
TCONS_00020267 mRNA upstream 1399266 47207691 ~ 47232146 (+) True XLOC_010253
TCONS_00020284 mRNA downstream 37474 48678655 ~ 48705831 (+) False XLOC_010265
TCONS_00020285 mRNA downstream 41128 48682309 ~ 48708045 (+) True XLOC_010265
TCONS_00020286 mRNA downstream 72867 48714048 ~ 48747788 (+) False XLOC_010266
TCONS_00020287 mRNA downstream 72897 48714078 ~ 48725396 (+) False XLOC_010266
TCONS_00020288 mRNA downstream 88766 48729947 ~ 48746341 (+) True XLOC_010266
TCONS_00020274 other upstream 374282 48257013 ~ 48257130 (+) True XLOC_010261
TCONS_00020273 other upstream 472989 48158309 ~ 48158423 (+) True XLOC_010260
TCONS_00020272 other upstream 608004 48023293 ~ 48023408 (+) True XLOC_010259
TCONS_00020265 other upstream 1618955 47012341 ~ 47012457 (+) True XLOC_010251
TCONS_00020229 other upstream 2964560 45666735 ~ 45666852 (+) True XLOC_010222
TCONS_00020297 other downstream 906590 49547771 ~ 49547886 (+) True XLOC_010272
TCONS_00020308 other downstream 1599142 50240323 ~ 50254974 (+) True XLOC_010278
TCONS_00020312 other downstream 1865995 50507176 ~ 50507295 (+) True XLOC_010284
TCONS_00020313 other downstream 2099799 50740980 ~ 50803345 (+) False XLOC_010281
TCONS_00020323 other downstream 2540890 51182071 ~ 51183994 (+) True XLOC_010292

Expression Profile

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