RNA id: TU564405


Basic Information

Item Value
RNA id TU564405
length 431
lncRNA type intronic
GC content 0.42
exon number 1
gene id G492037
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10235847 ~ 10236277 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTACATTGCAAAGATCTTGAGTTTTCACTGAAGGGCAAGTCTGTGGCGGCCTGACAAAGTCTGATGTTTCGCCATGAAAGAGGAAGCTGTTGTAATTCAGGCATACAGTGTTTGATCTGCCCCAAACTTCACATGTGTGATAAGAGTCCTGGCCTGAAGACATCTCTATGTTAATATTCAGTTAGTCATAGCGCCACCTGCTGACAACAGGAAGTGGCATGCTTTGCACAATAATTCACTCCCAGAAACACATTTAAATATGCCATGAAGTACCAAACATGCTAGAAACACGTTAAATCATGCAACACTTGGCACAAGTGCTAATGTATGCGATTAACGCCACGAAACAAGAAGTTGTTGTAACTCAGCATACAATGTTCAATCTGCTCCAAACTTCACGTTTGATAATAGTCCTGGCCTGAAGACATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564259 lncRNA downstream 13025 10137245 ~ 10222822 (-) True G491908
TU564388 lncRNA downstream 106587 10129060 ~ 10129260 (-) True G492020
TU564385 lncRNA downstream 110569 10125041 ~ 10125278 (-) True G492017
TU564370 lncRNA downstream 133438 10096672 ~ 10102409 (-) False G492005
TU564372 lncRNA downstream 133438 10100598 ~ 10102409 (-) True G492005
TU564419 lncRNA upstream 93584 10329861 ~ 10339931 (-) True G492050
TU564416 lncRNA upstream 113780 10350057 ~ 10353949 (-) True G492047
TU564737 lncRNA upstream 235331 10471608 ~ 10471838 (-) True CI01000340_10468562_10470670
TU564745 lncRNA upstream 443041 10679318 ~ 10679596 (-) True G492343
TU564768 lncRNA upstream 516451 10752728 ~ 10752946 (-) True G492364
CI01000340_10117381_10122090.mRNA mRNA downstream 113757 10116722 ~ 10122090 (-) True CI01000340_10117381_10122090
CI01000340_10051115_10063764.mRNA mRNA downstream 171610 10050524 ~ 10064237 (-) True CI01000340_10051115_10063764
CI01000340_10025958_10028902.mRNA mRNA downstream 206258 10025656 ~ 10029589 (-) False CI01000340_10025958_10028902
CI01000340_10005818_10020244.mRNA mRNA downstream 215603 10005692 ~ 10020244 (-) True CI01000340_10005818_10020244
CI01000340_09987410_09989834.mRNA mRNA downstream 244335 9987308 ~ 9991512 (-) True CI01000340_09987410_09989834
CI01000340_10258762_10264352.mRNA mRNA upstream 22276 10258553 ~ 10265625 (-) True CI01000340_10258762_10264352
CI01000340_10270796_10271185.mRNA mRNA upstream 34153 10270430 ~ 10271269 (-) True CI01000340_10270796_10271185
CI01000340_10357202_10357606.mRNA mRNA upstream 120481 10356758 ~ 10357659 (-) False CI01000340_10357202_10357606
CI01000340_10468562_10470670.mRNA mRNA upstream 231786 10468063 ~ 10472083 (-) False CI01000340_10468562_10470670
CI01000340_10473924_10477962.mRNA mRNA upstream 237592 10473869 ~ 10479040 (-) True CI01000340_10473924_10477962
TU564232 other downstream 207864 10021892 ~ 10027983 (-) True G491883
TU564040 other downstream 1436270 8799201 ~ 8799577 (-) True G491712
TU561564 other downstream 3908475 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 4015205 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 4910703 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU564413 other upstream 120907 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 1437469 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 1830900 12067177 ~ 12106251 (-) False G493266
TU565795 other upstream 1872716 12108993 ~ 12116900 (-) True G493266
TU566559 other upstream 2375939 12646587 ~ 12673525 (-) True G493928

Expression Profile