RNA id: TCONS_00020533


Basic Information

Item Value
RNA id TCONS_00020533
length 3456
RNA type mRNA
GC content 0.46
exon number 26
gene id XLOC_010454
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 9275689 ~ 9383629 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTGCGCTCCACAGTGGAAGCCATCCTGCCGGTGTATCGGCCGTGCACCACAGCCCGAGAGTCAGTTGTCCATCTGAAGGACCTGTGTGAGGAGCACGACCCTCACAAACCCCAACCACTATACGACAGAGAGGAACACAACACTAGCTCCATGTGGAGGGAGGCCATCCGAAAGAGGAGCTACTTGCTTGAGAGAAGCTCTAAGACTGGAGGAAATgtaaaaggaggaggaggaggtgtACAGAGGTCCCCAGACTGGCTGTATGACTCGTACCATCGTATGAGCCAGCAGCACCCACTTATTGTTTTTCTGCTCCTCATTGTGATGGGTGCCTGCCTAGCTCTGTTGGCTGTTTTCTTCGCCTCTGGGCTGGATATCGAGGATCACGTCGCCTTTGTAATCACTGTCCCCACGGCGCTGGCTATTTTCCTCACCATCTTTGTTCTGGTCTGTATCGAGTCTGTCTTCAAGAAGCTGCTCCGTGTTTTCTCCTTGGTGATCTGGGGCTGTCTGGTTGCCATGGGTTACCTCTTTATGTTTTTTGGAGGAATCATCTGTCCCTGGGATCAGGTGTCTTTCTTCTTGTTCATCATCTTTGTGGTATACACCATGCTTCCCTTTTCCATGAGGGATGCCATCATAGCCAGCGTGCTCACTGCATCCTCTCATACTGTTGTCCTCAGTGTCTGCCTCTCCTCTACAGTCAGTCATGTGGAGCCCCTGGTATGGCAGATTCTGGCAAATGTCATAATTTTCATATGTGGGAACGTGGCAGGAGCATACCATAAACACCTGATGGAACTGGCTCTGAAGCAGACATATCAAGACACCTGCAACTGTATAAAATCTCCCATCAAATTGGAGTTTGAAAAGCGTCAGCAGGAACGTCTGTTACTTTCTCTGCTTCCCGCTCACATTGCTCGAGTGATGAAAGCTGAAATCATACAGAGACTACAAGGGCCAAAGTTTGGTCAAGTGGAAAACACTAACAACTTCCATAATTTATATGTACAACGTCACACCAATGTCAGTATTTTGTATGCTGATATTGTTGGATTTACCCGCTTGGCCAGCGATTGCTCACCTGGAGAGCTGGTCCATATGTTGAATGAACTATTTGGCAAGTTTGATCAGATCGCCAAgGAGAATGAATGTATGAGAATAAAAATTCTAGGCGACTGTTATTACTGTGTATCTGGCCTTCCGGAGTCCTTGCCAAATCATGCCAAAAATTGTGTCAAGATGGGACTTGACATGTGTGAAGCTATCAAGAAAGTCCGAGATGCCACAGGAGTGGAAATTAGCATGCGAGTTGGTGTTCACTCTGGTAACGTTCTCTGCGGTGTAATTGGCCTCCAAAAATGGCAATATGACGTCTGGTCACATGATGTaactttagccaatcacatggaagcaGGTGGTGTACCAGGACGAGTCCACATTACCTCAGAGACTCTTGAACACTTGAACGGAGCATACAAGGTTGAAGATGGACATGGCCAGGAACGTGATCCTTATCTAAAAGAACATGGAGTTATAACCTACTTAGTGATCAACCCAAAGgtAGAGAGAAAGAGTCCTCAGCACTACTACAGACCAAGACATACCATTGACGGGGCTAAAATGAGAGCTTCAGTGAGGATGACCAGATACCTGGAGTCCTGGGGTGCGGCCAAGCCTTTCGCCAACCTTCACCACAGAGACAGCATGACCAATGAGAATGGAAAGATTAACACCGCTGATGTGCCCATAGGCCAGTACCACTTTCAGAGACGTtcagaaagAACAAAATCTCAGAAGAAGCGGTTTGAGGAAGAGctgaatgagaggatgattagAACATTTGATGGCATCAACTCTCAAAAaCAATGGCTGAAATCAGAAGACATTCAAAGAATATCTTTGTTTTTCCATAATAAAGCTTTGGAAAAAGAGTATAGAGCAACAACCCTGCCGGCCTTCAAATATTACATCACCTGTGCCTGCTTGATATTCTTCTGCATTTTCATCGTTCAGATCCTGGTCCTGCCGAAAACTGCAATATTGGGAGTGTCTTTTGGCATGTCCTTCTTAATTCTATCTGTGATTCTGCTCGTTTGCTTCATTGGTCATTTCTTGCAATGCAAAAAGACAGCCTCTGCATCTTGGGTTTGGATCCTTAGATCCTCGGGAATCATTGCCAGCAAGCCCTGGCCACGCATCACCCTCACCATGGCAACCACAGCCCTCATTCTGATCATGGCTGTCTTCAATATGTTCTTCATAGAAGACAACCTAACATTGATGGAGACTGTTTACAATACATCAAATGAGACACTTCTTCAGCCTGACGGACAGCCCATACCTTACCTGGACAAGAACACATTCTACCTTCCTTATTTTATCTACAGTTGCATTCTGGGCTTGATCTCCTGCTCTGTGTTTCTGAGGATCAACTATGAGCTGAAGATGCTCATCATGCTAACAGCTGTGGTGCTCTACAGTGTCATCATACTTCAAACACACGCATCACTACTGGACGAGTACAGTAAATTCCTCTACAAAACAGAAGTCATTGAAAGGCCAGGAGTTCTGAAAGACTTGAAAACAATGGGCTCCGTTTCTCTCTTTATATTCTTCATCACCTTGCTTGTTCTAGCCAGACAGAATGAATATTACTGTAGGTTGGACTTCCTGTGGAAGAACAAGTTCAAGAAGGAATGTGAGGAGATAGAGACCATGGAAAATCTCAATCGGGTTCTGCTGGAGAATGTTCTACCAGCGCATGTAGCCGAGCACTTCCTGGCCAGAAACTGGAAgaatgagGATCTGTATCACCAATCATATGACCTGGTGTGTGTGATGTTCGCTTCTATCCCGGACTTCAAAGAGTTCTACACCGAATCAGATGTAAACAAGGAGGGTCTTGAGTGCCTCAGACTACTCAACGAAATCATTGCAGACTTTGATGAGTTGCTCTCTAAGCCAAAGTTCAGCGGAGTAGAGAAAATAAAGACCATTGGAAGTACATATATGGCAGCCACTGGGCTTAATGCCACACCAGGACCTGAATATACCCAGGAGCATGACAGGCAATACATGCACATAGGTACCATGGTAGAGTTTGCTTTTGCACTGGTGGGGAAGCTTGATGTCATCAATAAACATTCCTTTAATGACTTCAAACTCAGAGTGGGTATTAATCATGGACCTGTGAAAGCTGGGGTGATAGGAGCTCAGAAACCCCAGTATGACATCTGGGGCAACACAGTGAATGTAGCGAGCAGAATGGACAGCACGGGAGTGCTTGGAAAGATACAAgttacaGAAGAGACGAGTTGCATTTTGCAGACATTGGGCTACACGTGCTCATGCAGaggaattataaatgttaaaggGAAAGGAGAGCTCAAAACGTACTTTGTCCACACTGAGATGTGCCGGTCTTTGTCCCAGGGGAATGTAATGCCATGA

Function

GO:

id name namespace
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006171 cAMP biosynthetic process biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004016 adenylate cyclase activity molecular_function
GO:0016829 lyase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016849 phosphorus-oxygen lyase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061109-1 Predicted to enable adenylate cyclase activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within cAMP biosynthetic process and intracellular signal transduction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Used to study congenital heart disease. Orthologous to human ADCY2 (adenylate cyclase 2).

Ensembl:

ensembl_id ENSDART00000084264

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022116 lncRNA downstream 596227 8668981 ~ 8679462 (-) True XLOC_010452
TCONS_00022115 lncRNA downstream 710588 8551789 ~ 8565101 (-) True XLOC_010451
TCONS_00020523 lncRNA downstream 972510 8300824 ~ 8303179 (-) True XLOC_010448
TCONS_00021785 lncRNA downstream 1133377 8140712 ~ 8142312 (-) True XLOC_010444
TCONS_00020515 lncRNA downstream 1290788 7968221 ~ 7984901 (-) True XLOC_010442
TCONS_00020539 lncRNA upstream 57392 9441021 ~ 9442003 (-) False XLOC_010457
TCONS_00020541 lncRNA upstream 180874 9564503 ~ 9566371 (-) True XLOC_010458
TCONS_00022117 lncRNA upstream 375547 9759176 ~ 9761753 (-) True XLOC_010461
TCONS_00022118 lncRNA upstream 629356 10012985 ~ 10013605 (-) True XLOC_010466
TCONS_00020554 lncRNA upstream 681297 10064926 ~ 10065880 (-) False XLOC_010468
TCONS_00020532 mRNA downstream 348264 8751815 ~ 8927425 (-) True XLOC_010453
TCONS_00020528 mRNA downstream 612137 8529772 ~ 8663552 (-) False XLOC_010451
TCONS_00020536 mRNA upstream 37373 9421002 ~ 9425451 (-) False XLOC_010456
TCONS_00020537 mRNA upstream 38782 9422411 ~ 9423735 (-) True XLOC_010456
TCONS_00020538 mRNA upstream 50109 9433738 ~ 9453591 (-) False XLOC_010457
TCONS_00020540 mRNA upstream 63291 9446920 ~ 9449712 (-) True XLOC_010457
TCONS_00020542 mRNA upstream 288497 9672126 ~ 9675982 (-) True XLOC_010459
TCONS_00020526 other downstream 796680 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020525 other downstream 880130 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020521 other downstream 987242 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020507 other downstream 1579473 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020506 other downstream 1579478 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020559 other upstream 871578 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020565 other upstream 1446180 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020567 other upstream 1532661 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020572 other upstream 2377290 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020591 other upstream 2628445 12012074 ~ 12012188 (-) True XLOC_010492

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_11670870_11794943.mRNA True 3408 mRNA 0.48 23 CI01000016 11670818 ~ 11795083 (-)