RNA id: TCONS_00020547


Basic Information

Item Value
RNA id TCONS_00020547
length 2727
RNA type mRNA
GC content 0.39
exon number 5
gene id XLOC_010464
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 9833256 ~ 9897769 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCAGAAGACAACGTTTTCAGCTTGTTTCAGTACAGTTATAGTTTCGTTCTCTGCTGTTGCGTTGGACCCTACttctgttttgttcatttgtttacacCAGCCGCCTGCAGAAAGTTTGTCAACgtgAAAATCTTTAGACAGAGCCTGGTCAACTGGTCAAGCCTGTGGATTTCCTCTGGCACTAGTGCTGTCTTGTGAAACGAAACCATGGGGAAACAGAACAGCAAGCTCCGGCCTGAGGTGATGCAAGACCTGTTAGAGAGCACAGACTTTACAGAGCACGAGATCCAGGAATGGTACAAAGGCTTTCTAAGGGACTGTCCCAGTGGCAACCTCTCAATGGAGGAGTTTAAGAAAATCTATGGAAACTTCTTTCCTTATGGAGATGCCTCAAAGTTTGCAGAGCACGTTTTCCGTACGTTTGATGCAAACGGCGATGGTACCATTGACTTTCGGGAGTTCATAATTGCATTGAGCGTCACGTCACGAGGAAAACTGGAACAGAAGCTTAAGTGGGCTTTTAGTATGTATGATCTGGATGGAAACGGCTACATCAGCAAATCAGAGATGCTTGAGATTGTGCAGGCTATTTACAAGATGGTGTCATCAGTGATGAAGATGCCAGAGGATGAGTCCACACCTGAGAAGAGAACAGAAAAGATCTTCCGACAAATGGACACCAATCGGGATGGAAAACTGTCTCTGGAGGAGTTTATCAAAGGCGCAAAGAGTGACCCATCCATTGTTCGTCTGCTACAGTGTGATCCCAGCAGTGCAGGACAGTTCTGAGATCAGCGTCTCGTTCTtcaaccttttatttatttattggttttaattttgtttttgagagTCACTCCTTCTGCTTGCAGGGAAATGATGCagggtcctttttttttttttttttttttttttttttttctttcttttcagaaTATGGCATCTGGGTCTCATCAAACTGAGTTTGGCCAGAAATAgtaacacacatacgcacacacagagTTATTGGCCATGTTGTCTCAGCAGGGAGCCGTACCAGGTCTGAAAGAGGCATGTGATGGAGTGAACTAGAGCTGAAATCTGAGCTGAATTAATTTCCTGATAAGACAACAGGTTTTAGATCTTGTTAGGAATACTATCTGGGTACTAGAGCTGTGACAGTTTAAGCTTGACCAACACATGAATATAATATAAGATTGGAAATCATTCTTGAACAGTAGTGGAATCGCTTTTGTCTCTACAAACACCTCAGCATTGGTTATGTCTAAGTATTTGAGGTCGTTTTTCAATTTCAGATTGTGTATCTCAAATCAATGGTTATGCCAACGTCATAATTGGCAGATCACAGTACAGTTCTCCTAAGGGACCAATACGTCAGGCATGCAGAATTCCAGTTGTACACTGACGATTCCCCACATTGTGCTCAATCTAAAGAGCCTTGTCATTTATGCTGAAAACGAACATCAGATTTTGATTCATTCGGTTTTAGTCTACTGTTTGGAAAAACATGAACGTTTTCTAATATTTGTATTCTGGTAACGGTAAGCTTGTATATAAATCTAAAAGCATCAGACACGCATGCGAAACTCTACTCATCTTAGGATGCAGCGATTGGTTTTATTGATGTTTTGAACAAAAGCATGCGACAGCGAGTTTATCTTCATTGGTAGACAGGAGAGTATTTGTGTAATTTGTAtgcatgtgttgtgtgtgtgtgtgtgtattcggtTAATATCAGTTACAGCCTGGTTCGCTCACCCTGGTTCTAGATGTTGTGATGCATTGTTCGCATTTTACCGAAGGTTTGTGTTGTTGGAAAAACAACTAAAGCTTTATTGATTTAAAGGTTTCTACGATCACGTTTATCTGCTATACAGCCGGTCTTTAACTCCTGATTGTACACGTGTGCATCATCACGTTACTGAATTGCCTTATACTGTACACACTGAAGTGTTTCTGGGGATGAGTGAGATTTATATGCCTTTTTCAAATTAAGCTGAAGCTCTTCTCATTCACTCATTGGGCAGATGTCGTTTTGTCGAGAGCATCTTGCTTCTAATATTAACCTGGCATACTAAATTGTACTTTCGGTTAGGATCTCATGTCATAGAACGAGTTTTTCCACTCATGCGGTATCCATTGCACTTGCAGCATGTACTGATTAAACAACGGGTGGAGAGCATTTATTCAGAACTCCTAACAGTTCCTATAGCACCCTCTGCCCTGCTTTTAGTGATCGCGCTGAAACCACGGAAAGCCACGCTTCTGCTTCTCATGTTCTTGAATTTCCCTGTGAACGTTAAATGCCTCACCACAGTGCATTCAATTCTGCTATACTGTTAATGAACTTGTTTGAATGATTTGTTTTTGACTCATTGAACAACTGctgttttttgtaaaaaatgtcgagtaaaaaaaagttaatgcagCAGATCAAACTGCTttgttatttcatgttttatgtgAATTTTATGTCGTTTTTCcattttgttttccatttttaacATCTGACGTAACATTTCTGTATCACCGATATATCATGTGGGCAGGTGCCAAAAATATAAAAGCAGTATTGTAtaaatttatactgtaaaaaatattctttGTCAAACTACTTGTTTGTAATTGTTGCATTTTGTAGATTTTGTATGGTAATCTGTATTTTGTGACTGTAGATTTGAGACATGAAAAAATTGTTTTGGTTATAATATTGAGCAGAGATTAAATC

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080220-28 Predicted to enable calcium ion binding activity. Orthologous to human NCALD (neurocalcin delta).

Ensembl:

ensembl_id ENSDART00000104058

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022117 lncRNA downstream 71503 9759176 ~ 9761753 (-) True XLOC_010461
TCONS_00020541 lncRNA downstream 266885 9564503 ~ 9566371 (-) True XLOC_010458
TCONS_00020539 lncRNA downstream 391253 9441021 ~ 9442003 (-) False XLOC_010457
TCONS_00022116 lncRNA downstream 1153794 8668981 ~ 8679462 (-) True XLOC_010452
TCONS_00022115 lncRNA downstream 1268155 8551789 ~ 8565101 (-) True XLOC_010451
TCONS_00022118 lncRNA upstream 115372 10012985 ~ 10013605 (-) True XLOC_010466
TCONS_00020554 lncRNA upstream 167313 10064926 ~ 10065880 (-) False XLOC_010468
TCONS_00020557 lncRNA upstream 307497 10205110 ~ 10207842 (-) False XLOC_010469
TCONS_00022119 lncRNA upstream 523557 10421170 ~ 10429820 (-) False XLOC_010472
TCONS_00022120 lncRNA upstream 523557 10421170 ~ 10429893 (-) True XLOC_010472
TCONS_00020546 mRNA downstream 2805 9807263 ~ 9830451 (-) True XLOC_010463
TCONS_00020544 mRNA downstream 30258 9787383 ~ 9802998 (-) False XLOC_010462
TCONS_00020545 mRNA downstream 30807 9793868 ~ 9802449 (-) True XLOC_010462
TCONS_00020543 mRNA downstream 138434 9680908 ~ 9694822 (-) True XLOC_010460
TCONS_00020542 mRNA downstream 157274 9672126 ~ 9675982 (-) True XLOC_010459
TCONS_00020551 mRNA upstream 80245 9977858 ~ 9980402 (-) True XLOC_010465
TCONS_00020552 mRNA upstream 128283 10025896 ~ 10053049 (-) True XLOC_010467
TCONS_00020553 mRNA upstream 157879 10055492 ~ 10071886 (-) False XLOC_010468
TCONS_00020555 mRNA upstream 167899 10065512 ~ 10071887 (-) True XLOC_010468
TCONS_00020556 mRNA upstream 199509 10097122 ~ 10261652 (-) False XLOC_010469
TCONS_00020535 other downstream 531062 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020526 other downstream 1354247 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020525 other downstream 1437697 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020521 other downstream 1544809 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020507 other downstream 2137040 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020559 other upstream 357594 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020565 other upstream 932196 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020567 other upstream 1018677 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020572 other upstream 1863306 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020591 other upstream 2114461 12012074 ~ 12012188 (-) True XLOC_010492

Expression Profile

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