RNA id: CI01000344_02756871_02861561.mRNA


Basic Information

Item Value
RNA id CI01000344_02756871_02861561.mRNA
length 2484
RNA type mRNA
GC content 0.53
exon number 8
gene id CI01000344_02756871_02861561
representative True

Chromosome Information

Item Value
chromosome id CI01000344
NCBI id null
chromosome length 3248351
location 2756871 ~ 2861561 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTATCTGCTCCATGCCTGTAAACGGGATTTGGGCCATGCCCGAAATCCGGAGGCCACCCATGCAATTACTTTCCTCTGGTTGGCACTGTGGATTGCCTTGACATCGTGTCAGCGCATTGATCCTGGCACCAAATATCCCACCGTCACTACAAACTATGGTAAATTGCGTGGGATTAAAAAAGAGCTTAACAATGAGATTTTGGGTCCAGTGGAACAGTACCTGGGTGTCCCCTATGCCACAGCTCCAATTGGAGACCGTCGCTTTCAGCCCCCAGAAGCTCCTGGGTCCTGGCAGGAAGTGCGTAATGCTACGCAGTTTGCCCCTGTTTGCCCACAAAACGTGCATGGTGTTTTGCCCGAGATCATGCTGCCTGTGTGGTTTACAGACAGCTTGGATGTGGCTGCCACCTACATTCAGAATCAGAGTGAAGACTGTCTGTACCTCAACATCTATGTGCCCACAGAGGATGGTCCACTCACAAAAAAACACGATGAATCAACACTGAACCGGCCACGGGATGAAGACATCCGTGACCGCAGGAAGAAACCTGTCATGATGTTTATTCACGGTGGCTCTTATATGGAAGGAACCGGAAACATGTTTGATGCCAGCGTGCTTGCGGCATATGGCAACGTCATTGTAGTCACCATGAACTATAGGCTGGGAGTTCTGGGTTTTCTTAGCACAGGAGATCAGTCTGCTAAAGGGAACTACGGCCTCTTGGATCAAATCCAGGCCTTGCGTTGGCTGAATGAGAATATTGGACACTTCGGTGGCGACCCTGAACGGATCACTATCTTTGGTTCTGGGGCCGGAGCGTCATGTGTCAACCTACTCATCCTGTCCCACCACTCTGAGGGCCTGTTTCAGAGAGCCATAGCTCAGAGTGGTTCAGCCATCTCCAGCTGGTCCATTAGCTACCAGCCCTTGAAGTACACCAAGATTCTGGCCCGTAAAGTAGGATGCACATATGGGGAGACCGCAGACCTGGTGGACTGTCTCCGCAGGAAAAATTTCAGAGAGTTGGTGGACCAGGACATCCAGCCGGCCCGCTACCATATTGCGTTTGGACCTGTGATGGACGGAGATGTTGTGCCAGATGACCCCGAGATCCTGATGCAGCAGGGGGAGTTCTTGAACTACGACCTTCTGATTGGTGTAAATCAAGGGGAGGGGCTGAAGTTTGTGGATGATGGGGGCACTGAGAGTGAAGAGGGGATTTCAGCTGCAGCTTTTGATTATACCATCTCCAACTTTGTGGATAACCTCTATGGATACCCTAAAGGTAAAGACATCCTGAGGGAGACTATCAAGTTCATGTACACAGACTGGGCGGACCGAGACAATGGGGAAATGCGGCGCAAGACTCTCCTCGCATTATTCACTGATCACCAGTGGGTGGCACCAGCCATCGCTACTGCCAAACTCCATGCGGACTATCAGTCTCCCGTCTACTTCTACACATTCTACCACCACTGCCAAACAGAGACTCGACCCGAATGGGCAGATGCGGCACACGGGGACGAGATACCCTATGTGTTTGGCGTGCCCATGATCGGAGCAACTGACCTCTTCCCTTGCAACTTTTCCAAAAATGATGTCATGCTTAGTGCTGTGGTCATGACCTACTGGACCAACTTTGCCAAGACCGGGGATCCCAACTTGCCTGTTCCTCAGGACACCAAGTTCATCCATACCAAGCCCAACCGCTTTGAGGAAGTGATCTGGACCAAGTTCAACTCTAAAGACAAGCAGTATCTCCACATCGGCCTGAAGCCTCGCATCCGGGACAACTACCGAGCAAATAAGGTCGCCTTCTGGCTGGAACTGGTTCCTCACCTCCACAACCTCCACGAGGAAGTCTTCAGCACCGCCACAACCCGGCTGCCTCCGGGTACCGCCCGTACCCCACACTTTAAAGGTCAGGGACCCCGTACGACACGCCATCCCATCCCAACCTTCCCTTCAGAACCGGACCCAGATAGCTCAGAGCCCCCTCGATTTCCTCCCTTCCCAAGCGACACACGAGACTACTCTACAGAACTGAGCGTGACGGTAGCCGTTGGCGCGTCGCTCCTCTTCCTTAACATCCTCGCCTTCGCCGCGCTTTACTACAAACGCGACAAACGGCATGAGATGCGACGACACCGGTTGTCCCCGCAACGAGGCGTACCGGCTAATGACTTAGCACACAGCCAGGAGGAAGAGATCATGTCCTTGCAAATGAAGCACTCGGAGCACGACGCCCACCACGACATGGAGCCATTGCGACCGCATGATATTTTACGTCCCGCATGCCCACCCGACTACACGTTGGCGCTGAGGCGGGCGCCCGACGATGTTCCGCTCATGACCCCTAATACTATCACCATGATTCCTAGCACCATCACCAGCATGCAGCCCCTCCATGCCTTCAACGCCTTCCCCACAACCACCGGTCACAACAACACCTTACCCCACCCTCACTCCACCACCCGTGTA

Function

GO:

id name namespace
GO:0050808 synapse organization biological_process

KEGG:

id description
K07378 NLGN; neuroligin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574106 lncRNA downstream 90625 2610171 ~ 2666246 (-) True G500474
TU574107 lncRNA downstream 128572 2626147 ~ 2628299 (-) True G500475
TU574117 lncRNA downstream 141988 2608896 ~ 2614883 (-) True G500485
TU574174 lncRNA downstream 152952 2603680 ~ 2603919 (-) True G500539
TU574173 lncRNA downstream 153364 2603246 ~ 2603507 (-) True G500538
TU574125 lncRNA upstream 27583 2889144 ~ 2934989 (-) True G500493
TU574253 lncRNA upstream 256530 3118091 ~ 3143256 (-) True G500613
TU574274 lncRNA upstream 321136 3182697 ~ 3183134 (-) True G500633
TU574275 lncRNA upstream 321910 3183471 ~ 3183702 (-) True G500634
TU574276 lncRNA upstream 323139 3184700 ~ 3186198 (-) True G500635
CI01000344_02729258_02730435.mRNA mRNA downstream 25660 2728570 ~ 2731211 (-) True CI01000344_02729258_02730435
CI01000344_02720070_02724425.mRNA mRNA downstream 32446 2719853 ~ 2724425 (-) True CI01000344_02720070_02724425
CI01000344_02716955_02719009.mRNA mRNA downstream 37471 2716646 ~ 2719400 (-) True CI01000344_02716955_02719009
CI01000344_02692791_02695643.mRNA mRNA downstream 61228 2692176 ~ 2695643 (-) True CI01000344_02692791_02695643
CI01000344_02680787_02688534.mRNA mRNA downstream 68337 2680661 ~ 2688534 (-) True CI01000344_02680787_02688534
CI01000344_03025864_03058509.mRNA mRNA upstream 163196 3024757 ~ 3058516 (-) True CI01000344_03025864_03058509
CI01000344_03152876_03154695.mRNA mRNA upstream 290585 3152146 ~ 3155687 (-) False CI01000344_03152876_03154695
CI01000344_03173512_03177748.mRNA mRNA upstream 311925 3173486 ~ 3177748 (-) False CI01000344_03173512_03177748
CI01000344_03210719_03211618.mRNA mRNA upstream 349081 3210642 ~ 3211618 (-) True CI01000344_03210719_03211618
CI01000344_03211733_03215881.mRNA mRNA upstream 350074 3211635 ~ 3216004 (-) True CI01000344_03211733_03215881
TU574122 other downstream 11350 2738338 ~ 2745521 (-) True G500490
TU573592 other downstream 636394 2118371 ~ 2120477 (-) True G499994
TU573489 other downstream 940923 1815542 ~ 1815948 (-) True G499918
TU573330 other downstream 1333697 1422351 ~ 1423174 (-) True G499807
TU573324 other downstream 1337803 1414016 ~ 1419068 (-) True G499804
TU574094 other upstream 87248 2948809 ~ 3134843 (-) False G500466
TU574097 other upstream 87248 2948809 ~ 3134843 (-) True G500466
TU574100 other upstream 290537 3152098 ~ 3155211 (-) True CI01000344_03152876_03154695
TU574093 other upstream 311842 3173403 ~ 3177780 (-) False CI01000344_03173512_03177748

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067503 False 6392 mRNA 0.43 8 NC_007118.7 21940857 ~ 22132265 (-)