RNA id: TU577387


Basic Information

Item Value
RNA id TU577387
length 314
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G503439
representative True

Chromosome Information

Item Value
chromosome id CI01000346
NCBI id null
chromosome length 2218337
location 1695554 ~ 1696004 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAGGGACTGTTTTTTTTTTGAAGGTTTGGAGATGACCTTGATCCTCTTGCTGAGGAAGACGCCGATGTCTGCGCTGTTGCCGTAAAACATCTTCACCGACAGCATGAAGTGCTTGCGTTTGTCCGAGTCTGATATATATAATGTTTTGGCTGTGCAATAGTTCTTCCCCTCTAAGTTTAGCTGCTGCATCTCCTGATCGCTGTTGCCGATGCCGATGAAGGCGCATGGCTGAGATTCCTGCTCCGAGCAGCCGTCTCGCTCCATCTGTTCTCTCTTCTTCTTCCATCCACAGCCCATCAGATACACACATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU577379 lncRNA downstream 59832 1635513 ~ 1635722 (-) True G503432
TU577367 lncRNA downstream 73849 1621497 ~ 1621705 (-) True G503420
TU577354 lncRNA downstream 112429 1582888 ~ 1583125 (-) True G503408
TU577334 lncRNA downstream 155903 1539001 ~ 1539651 (-) True G503388
TU577338 lncRNA downstream 159869 1534177 ~ 1535685 (-) True G503392
TU577386 lncRNA upstream 6078 1702082 ~ 1706674 (-) True G503438
TU577425 lncRNA upstream 37395 1733399 ~ 1737931 (-) True G503477
TU577432 lncRNA upstream 45860 1741864 ~ 1749820 (-) False G503483
TU577433 lncRNA upstream 53230 1749234 ~ 1749820 (-) True G503483
TU577437 lncRNA upstream 53975 1749979 ~ 1750228 (-) True G503487
CI01000346_01686133_01686981.mRNA mRNA downstream 8567 1685747 ~ 1686987 (-) True CI01000346_01686133_01686981
CI01000346_01643579_01648514.mRNA mRNA downstream 46951 1643459 ~ 1648603 (-) True CI01000346_01643579_01648514
CI01000346_01607259_01616136.mRNA mRNA downstream 79214 1607089 ~ 1616340 (-) True CI01000346_01607259_01616136
CI01000346_01573208_01578869.mRNA mRNA downstream 116189 1572863 ~ 1579365 (-) True CI01000346_01573208_01578869
CI01000346_01557806_01567217.mRNA mRNA downstream 128337 1557310 ~ 1567217 (-) True CI01000346_01557806_01567217
CI01000346_01723087_01728859.mRNA mRNA upstream 24350 1720354 ~ 1728872 (-) True CI01000346_01723087_01728859
CI01000346_02050083_02052242.mRNA mRNA upstream 353763 2049767 ~ 2052666 (-) False CI01000346_02050083_02052242
TU577221 other downstream 330547 1361695 ~ 1361785 (-) True G503282
TU576579 other downstream 1623119 68756 ~ 72435 (-) True G502676

Expression Profile