RNA id: CI01000352_01385835_01391158.mRNA


Basic Information

Item Value
RNA id CI01000352_01385835_01391158.mRNA
length 2137
RNA type mRNA
GC content 0.49
exon number 4
gene id CI01000352_01385835_01391158
representative True

Chromosome Information

Item Value
chromosome id CI01000352
NCBI id null
chromosome length 2255705
location 1385232 ~ 1391321 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGCTCTGATGAGATATGAATGCTAACATTGGTTGAATGTTCCTGCTTTTTTCTGTGGCTGCTGATGAGATGCCTGTATGATACCAATGCTAACATTGTTGCTGCATTTGTTTGATCTTTTCTGTGTGTTCTTCTCTCCATCTGTGTGGCTGCATCAGGTGCCATGGCCAATCACCTCATCCCAAACTCTCTGCTGCGCTCACACGCCTCTAACAACCCCTATAACACCTTACTGGGCGAATCAGCCGTCTATAACAACCCCACTCTCAGCATGTACAACGCTCAAGCGCTCGTAGGAGGCTGTGAATTTCAGAACAAGCATGGGATAATGACTTCTTCATCTAAACAGAAATGTGAATACAAACTTTATACATGTATGAGTGCTGAATCACAAGACAAAATCGTCCACTCTTTTGAAGACATGACAGTTTGGACAGTAATGCATTACGTTTCTATGACATGTCACAGCACTGATGCAAATGAAAACACTAAATGTGCTCTTTGCGTACAAAACACTCACCCGATCAATAACTCTCTTACCGTATACAAGTCTGACTGTGGAACCGCGTTCGGAGCGGAGCGCGCCGCTAATGGAGACAGAAGCCCATTTCTGCACCCTCCAGACATTCAGGGGGCTTTAAAGCACAATTTTATGGCATTTACATGTGCATCATGGGATTGCAAGGGGACGTGGGAGGGAATCCTGAACAATGCTCGGGATACAAGTGCCATGGATACTCTACCACTGAATGGTAACCATGGCAACAGCTACAGCTTGGCCAGCGCCGATTACATGAGCGACTGCGTGCAAATCATCGACCGCACGTACAACGTACACAAAGAGACCACGCTGGAGAAACGGATCCTGAAAGAGCTCACCTCCAATTACTTGCCCACCTACCTGAACAACCACGACCGCACGGCCGAACACGGACGCAACCTTATGAACAAGTTGGTGAACGAAGTCAGCAACGGAGGTGGGGTGAAAGACTCACCCATGCTGCCCGTCAATCTTGCGTTGGGCTTGGACGACTCTGCATCTTTCCCGCCCGAGGACAGTCTGGGGCTGGATCTGATCAGGGAGGAGTCCAATGCACCTTTGCTTCCCCCACCGCGCCACATCCAGCCTCTTCCCACCACGTTCAGCTCAGCCTCTTCATTGCGACGGCGCCTTCCCCAAGAAAACAGCGAGAGTTTCTTCCCTCTGCTGACAGAGGAGCAAACGGAAGAGACTCCGTCCCCGCAGAGAGACTCGCTCTACACCAGCATGCCCACGTTGCCCGACCCCGAGCGCGCCGACACGCATTCGCTGCCCCACGGTGGCGACACGCACACGCTTCCCAGGACCGGGGAGCCAGATGATGTGTACTATAAGAGCATGCCCAACTTGGGCTCACGCAACCACCTGCACCAGCTGCATAGCTACTACCAACTGGGCCGCGGCAGCAGTGACGGCTTTATCGTCCCGCCCAAAGATGAGCTTTCGCCCGAAGAAATGCCGCAGGAGCCCGCACACATGGTCACCAGCCTATAGAGGGTGCTGAACGTCATGCATTCTGCTCTGCTCATCCTCATCACCCAATGACATCTTGAGCTCCACGTGCTCTTCTACGTTTCCGTACCGTTCTGTCGTCCGCAGTTGTTCACTCTTGCTTCTACGTGTCCGCGGAAAAATGAACTGCAACAACAAAACTTGGGAGGCGATTTTTGTATTCTGTTCAGGAAAGGATTATGGGTACTTTTGCTTGTTGAGGAATGAAAGCTGACATTCTTTTGGTTCTATTGGTCGTGCACTTCTACTTAAATGGGAAAACAGACCCAAAAATGGATTTTGCTGTATAACCTTACGGGGAGTGCGAGATTTCGAGGGTTTTTCACTCTCAGCAGCCCCGAAGGAATACAAATAACTGCCAAAAACATTGTTAGTAGCTCAGTGCGTCTAGTCAACACCAATCAAGTCTGAAACAATGTGACTCGGAAACTATTTTAATACCTTCTGTATCCATATTTGCTTTTTAAATATGTTTCTTCTTCTCATGTGGTGAACAGCAGCACATTTTGCTGCGACAGAGAACAATGCCGAAGAAGGACGACTCCACCGTTTCTGTTCTTTGCTGTATTAATAACAAATATTAAA

Function

GO: NA

KEGG:

id description
K04594 ADGRL3, LPHN3; adhesion G protein-coupled receptor L3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586493 lncRNA downstream 18121 1366822 ~ 1367111 (-) True G511505
TU586491 lncRNA downstream 21565 1363385 ~ 1363667 (-) True G511503
TU586489 lncRNA downstream 22898 1362117 ~ 1362334 (-) True G511501
TU586471 lncRNA downstream 56171 1328750 ~ 1329061 (-) True G511485
TU586466 lncRNA downstream 61314 1323672 ~ 1323918 (-) True G511480
TU586412 lncRNA upstream 186925 1578246 ~ 1583410 (-) True G511456
TU586435 lncRNA upstream 283373 1674694 ~ 1694095 (-) True G511460
TU586444 lncRNA upstream 317627 1708948 ~ 1715762 (-) True G511462
TU586503 lncRNA upstream 353116 1744437 ~ 1781995 (-) True G511514
TU586551 lncRNA upstream 399727 1791048 ~ 1791575 (-) True G511548
CI01000352_01119562_01209513.mRNA mRNA downstream 175719 1119460 ~ 1209513 (-) True CI01000352_01119562_01209513
CI01000352_01052455_01113533.mRNA mRNA downstream 270378 1052455 ~ 1114854 (-) True CI01000352_01052455_01113533
CI01000352_01028559_01034351.mRNA mRNA downstream 350590 1028374 ~ 1034642 (-) False CI01000352_01028559_01034351
CI01000352_01020693_01021619.mRNA mRNA downstream 361386 1020693 ~ 1023846 (-) False CI01000352_01020693_01021619
CI01000352_01015676_01018437.mRNA mRNA downstream 366795 1015661 ~ 1018437 (-) False CI01000352_01015676_01018437
CI01000352_01397252_01463649.mRNA mRNA upstream 5632 1396953 ~ 1464030 (-) True CI01000352_01397252_01463649
CI01000352_01486762_01593630.mRNA mRNA upstream 94880 1486201 ~ 1593630 (-) False CI01000352_01486762_01593630
CI01000352_01728291_01778896.mRNA mRNA upstream 336916 1728237 ~ 1779126 (-) True CI01000352_01728291_01778896
CI01000352_01877684_01893038.mRNA mRNA upstream 486343 1877664 ~ 1893038 (-) True CI01000352_01877684_01893038
CI01000352_01905186_01906917.mRNA mRNA upstream 513781 1905102 ~ 1907245 (-) False CI01000352_01905186_01906917
TU585859 other downstream 386960 972660 ~ 997817 (-) True G510953
TU585394 other downstream 1294574 87140 ~ 90658 (-) True G510549
TU586627 other upstream 684212 2075533 ~ 2085310 (-) True G511618

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066987 True 6291 processed_transcript 0.44 12 NC_007118.7 73023727 ~ 73088964 (+)
bowfin (Amia calva) TU116050 True 3170 lncRNA 0.35 2 CM030131.1 22686424 ~ 22689677 (-)