RNA id: TCONS_00022139


Basic Information

Item Value
RNA id TCONS_00022139
length 1558
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_010595
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 18137642 ~ 18140068 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGTCGATGGTATAGGGGTGAAATACTTGGGAGGAAACAACAGCCCCCGGAGAGCCCCTCTCGTGTGGTCATCATGGTAACCGGGTGAAACCTTACGGTTTCACTTACAAAAAAAGCACCGCAATAGCGCCGTAATGGTGCACTAGGTGTGACTTCTGTCCAGTGCTGAGATTCTCATCTGGAGATTACCACACGGGTAAATGGCAGAGGTATTCAAAACCTTAACGTTTACGATGGACATCCAAGTCTTGCACTTGCATCCAGGCCGGACCCGAAAATGCGGTAAATGCCCGTTCCCGAGGTAGCCTCTTAGAAAACCGAAGCCCGGTCGGGGCGGTGGTCGCGACGGCGCTGCGGAGGCCTGCGGCTCGCGCGGCATCGGTGCGCCGCAGTGGTTGCGGGGTGTGGCAGGGATTTCGGTCCTCGTGGCGCCGCTGCGGTTGCGTCGGTGGCGCTGGGGTGGCGGCCCAAGGGGCGCCGGCGTGCCACTACCCATAGACGCCCTCGGGGGCGGCTGATCTGGAGGGACGAGGGGGTTCGCGGGACTTTAATGAGAAACGGACCACAACTTCTCACATTGCTTCCGGGACTTTCCCCCCTCGTTCAGCCGAGGGATGACAAAAAGGCATGAAAGGTAAGTGCCATACCTGTCCACAAAACTCTCTCCTAACTTAGTACTCTCTGCTGGTTTTCTAGAGAAACAGCGAGATAGAGGAGAGGGACATGGCAGGGACTTCCATTTGTGCCAGCAGGTGGGGACAGATCGAAGGAACGATTCAAGGGCGTGGAAGACGAGAGGGTATCCGGTCACACATTGATACCAAGCCTAAATAGTATATATGCATCAGCCCTCACTGCGTGTCTGACGGTGGACTACTGGAGTTCATCACAGGCTCGACGAGAATGCAGAACTTTGCAATACATTTGCTCTCCTTTCTAGATCCTTCCAGCGGGTTTACAAGGATGAGGCTGTCGGCATCTTTTTACACAGCATTTACAATTTAATACACATTAAAGACGTGATGGTGTGGTACCCACATAAACATTGGCCAACttactgaaaaataattttaggttTACTTTTAAATAGGTCAGATGATATATTTTCCTTtcagtatacacacactcacacagatacttatacatatataaagagtAAAAATGCTGGTATTAACACTGCTTTTGattttgtgctatataaataaaacttgaactTGAGTTGCATTTAGAATCTGAACTTGAATTagggttgaagtttatttaatcagaaatgcagatcagatctgttgatcaaatctttgtaaatattttatactgtaacaaCTATACTTGTTTTTTTATGGATTGTTGCCTAAATGGGATCTGATACAGATAATCTTATACCCaatgaaaaaatgacaaaaagacatatttaaaaacttattttaattgttttaatatttgatgttgtttttattttaatacagaagctctgaaaaccttttgtaaaataaaaaagattttccagtaccttgtttacatgtttctgcattattccagacgttctgtgttatttgtg

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0030902 hindbrain development biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005829 cytosol cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022138 lncRNA downstream 312794 17823447 ~ 17824848 (-) True XLOC_010594
TCONS_00020756 lncRNA downstream 430878 17704830 ~ 17706764 (-) False XLOC_010592
TCONS_00022137 lncRNA downstream 431066 17704830 ~ 17706576 (-) False XLOC_010592
TCONS_00021793 lncRNA downstream 455690 17679103 ~ 17681952 (-) True XLOC_010591
TCONS_00020736 lncRNA downstream 896804 17235282 ~ 17240838 (-) True XLOC_010581
TCONS_00021794 lncRNA upstream 5349 18145417 ~ 18149149 (-) False XLOC_010596
TCONS_00020759 lncRNA upstream 5825 18145893 ~ 18150006 (-) False XLOC_010596
TCONS_00020760 lncRNA upstream 6190 18146258 ~ 18150003 (-) True XLOC_010596
TCONS_00022140 lncRNA upstream 332875 18472943 ~ 18501117 (-) False XLOC_010598
TCONS_00021795 lncRNA upstream 355626 18495694 ~ 18501131 (-) False XLOC_010598
TCONS_00020758 mRNA downstream 423783 17711215 ~ 17713859 (-) True XLOC_010593
TCONS_00020755 mRNA downstream 438531 17671301 ~ 17699111 (-) False XLOC_010591
TCONS_00020754 mRNA downstream 477048 17639896 ~ 17660594 (-) True XLOC_010590
TCONS_00020752 mRNA downstream 550759 17579915 ~ 17586883 (-) False XLOC_010589
TCONS_00020766 mRNA upstream 468910 18608978 ~ 18652646 (-) True XLOC_010600
TCONS_00020767 mRNA upstream 549862 18689930 ~ 18702249 (-) False XLOC_010601
TCONS_00020768 mRNA upstream 554762 18694830 ~ 18960333 (-) False XLOC_010601
TCONS_00020771 mRNA upstream 819285 18959353 ~ 18960613 (-) True XLOC_010601
TCONS_00020772 mRNA upstream 884955 19025023 ~ 19026414 (-) False XLOC_010603
TCONS_00020757 other downstream 431655 17705898 ~ 17705987 (-) True XLOC_010592
TCONS_00020738 other downstream 890279 17247222 ~ 17247363 (-) True XLOC_010583
TCONS_00020737 other downstream 892595 17244908 ~ 17245047 (-) True XLOC_010582
TCONS_00020724 other downstream 1008176 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020722 other downstream 1017456 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020761 other upstream 228846 18368914 ~ 18372540 (-) True XLOC_010597
TCONS_00020762 other upstream 355472 18495540 ~ 18501141 (-) False XLOC_010598
TCONS_00020763 other upstream 357227 18497295 ~ 18501141 (-) False XLOC_010598
TCONS_00020764 other upstream 357486 18497554 ~ 18501117 (-) True XLOC_010598
TCONS_00020765 other upstream 440656 18580724 ~ 18583338 (-) True XLOC_010599

Expression Profile

//