RNA id: TCONS_00020760


Basic Information

Item Value
RNA id TCONS_00020760
length 775
lncRNA type antisense
GC content 0.43
exon number 5
gene id XLOC_010596
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 18145417 ~ 18150006 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCATGATGCGTCTTTTTGCAAATTGTTAGCCCTAACTCTTTAGCGAATTTTTCTTCAGTATGCCACGAAAAAAGACGATTTCTTTGACGAGGAACTGCCCCCAACGCAGCGAAGCTGAAGCTGACCTCTTGAGTGAAGaacCACCTGAATCATCCCAAAAAATTCATAAAGTACACCATGATAAAGACGATGACAATGACCTTTCTGTTGTTGCGGTGGAAACCATAACTCCAGAACCAGgacAAGATGATGGGTCTTCCTCTATGGTGGAAAAAGACAAGCTGATGCTCATGGCCCAGACAATACAAACACTTAAACAGGAACGAGATTTTCTCCGCCAAACTGTCCTAAAATTGTCAAACAGAGGggcaaaaaaagtaaagaaagtcTTGGACACAAGCACTGAATGCAGCACCAGTAACACTGATGAGGAGTCCATGACTTCTTCCTCCTCTTCAGATTCACCTGATAGTGATATTCCTCGGAAGAAGAGAAAGAGTCATAAGAAGACAAAGAGGGCCAGCAGGTCAAAATCTACCAAGCACAGCACACGTGCTTTTATCTTTCTACAGCAACAACCCCTGATGACGTACTAAGGCGGTACAACAAAGTTTTCAATGCCTATAAAAAAGAAGGGAGCATTAGTAAAGCATGTGCCAAAGTTGGGGTTGACCGTAATACTCTCGCATTAACAGCTGTTGTGGCTGAAATTCAGCTTGTTGATGCTGAGTTTTACAGAAGCATCCCTAAATTCAGAACCGAGGAGAAACTTT

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0003002 regionalization biological_process
GO:0060026 convergent extension biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000149862

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022139 lncRNA downstream 6190 18137642 ~ 18140068 (-) True XLOC_010595
TCONS_00022138 lncRNA downstream 321410 17823447 ~ 17824848 (-) True XLOC_010594
TCONS_00020756 lncRNA downstream 439494 17704830 ~ 17706764 (-) False XLOC_010592
TCONS_00022137 lncRNA downstream 439682 17704830 ~ 17706576 (-) False XLOC_010592
TCONS_00021793 lncRNA downstream 464306 17679103 ~ 17681952 (-) True XLOC_010591
TCONS_00022140 lncRNA upstream 322940 18472943 ~ 18501117 (-) False XLOC_010598
TCONS_00021795 lncRNA upstream 345691 18495694 ~ 18501131 (-) False XLOC_010598
TCONS_00020770 lncRNA upstream 746964 18896967 ~ 18960586 (-) False XLOC_010601
TCONS_00020774 lncRNA upstream 995144 19145147 ~ 19150743 (-) True XLOC_010604
TCONS_00021796 lncRNA upstream 1345741 19495744 ~ 19497804 (-) True XLOC_010608
TCONS_00020758 mRNA downstream 432399 17711215 ~ 17713859 (-) True XLOC_010593
TCONS_00020755 mRNA downstream 447147 17671301 ~ 17699111 (-) False XLOC_010591
TCONS_00020754 mRNA downstream 485664 17639896 ~ 17660594 (-) True XLOC_010590
TCONS_00020752 mRNA downstream 559375 17579915 ~ 17586883 (-) False XLOC_010589
TCONS_00020766 mRNA upstream 458975 18608978 ~ 18652646 (-) True XLOC_010600
TCONS_00020767 mRNA upstream 539927 18689930 ~ 18702249 (-) False XLOC_010601
TCONS_00020768 mRNA upstream 544827 18694830 ~ 18960333 (-) False XLOC_010601
TCONS_00020771 mRNA upstream 809350 18959353 ~ 18960613 (-) True XLOC_010601
TCONS_00020772 mRNA upstream 875020 19025023 ~ 19026414 (-) False XLOC_010603
TCONS_00020757 other downstream 440271 17705898 ~ 17705987 (-) True XLOC_010592
TCONS_00020738 other downstream 898895 17247222 ~ 17247363 (-) True XLOC_010583
TCONS_00020737 other downstream 901211 17244908 ~ 17245047 (-) True XLOC_010582
TCONS_00020724 other downstream 1016792 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020722 other downstream 1026072 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020761 other upstream 218911 18368914 ~ 18372540 (-) True XLOC_010597
TCONS_00020762 other upstream 345537 18495540 ~ 18501141 (-) False XLOC_010598
TCONS_00020763 other upstream 347292 18497295 ~ 18501141 (-) False XLOC_010598
TCONS_00020764 other upstream 347551 18497554 ~ 18501117 (-) True XLOC_010598
TCONS_00020765 other upstream 430721 18580724 ~ 18583338 (-) True XLOC_010599

Expression Profile

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