Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

economic fish

RNA id: CI01030818_00001287_00001442.mRNA

Basic Information

Item	Value
RNA id	CI01030818_00001287_00001442.mRNA
length	156
RNA type	mRNA
GC content	0.56
exon number	1
gene id	CI01030818_00001287_00001442
representative	True

Chromosome Information

Item	Value
chromosome id	CI01030818
NCBI id	null
chromosome length	2456
location	1287 ~ 1442 (+)
genome version	v1_2015/06_NatureGenetics_grasscarp_Genome
species	grasscarp (Ctenopharyngodon idella)

Sequence

GCGCTCTGGATGATGGAGCCCAAAGACATCAGCGAGTGGCAGCATGAGGAGTTTTATCGTTATGTGGCTCAAGCCCACGACAAACCCCGCTACACGCTACACTACCGCGCTGACGCCCCACTCAATATCCGCAGCATCTTCTACGTGCCGGAGATG

Function

GO:

id	name	namespace
GO:1901856	negative regulation of cellular respiration	biological_process

KEGG:

id	description
K09488	TRAP1, HSP75; TNF receptor-associated protein 1

JBrowse2

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Expression Profile

Homologous

species	RNA id	representative	length	rna type	GC content	exon number	chromosome id	location
eurasian perch (Perca fluviatilis)	TU25544	True	562	lncRNA	0.57	2	NC_053113.1	21878212 ~ 21878804 (+)
striped catfish (Pangasianodon hypophthalmus)	TU25544	True	3638	lncRNA	0.46	2	NC_047596.1	4192003 ~ 4232095 (-)
tiger barb (Puntius tetrazona)	TU25544	True	590	TUCP	0.64	4	NC_056701.1	4447380 ~ 4448881 (-)