RNA id: TU25544


Basic Information

Item Value
RNA id TU25544
length 590
RNA type TUCP
GC content 0.64
exon number 4
gene id G17131
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4447380 ~ 4448881 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagagagagagagagagagagagagagagagagacagagagagaaagagagagagagagagagagagagagagagagagagagacagagagagacagagagagagagagagacacacacacacacacacggggcgTGCTCGGGAGCTGCTGAAGTGACTGTGTCTGTTTTGCAGGAGGTCGTGACCAAGTACAGCAACTTTGTCAGTTTTCCCATCTTCCTGAACGGACGGCGGTTGAACACGCTGCAGGCGCTGTGGATGATGGAGCCCAAAGACATCAGCGAGTGGCAGCACGAGGAGTTTTATCGCTACGTGGCTCAAGCTCACGATAAACCGCGCTACACGCTGCACTACCGCGCTGACGCTCCGCTCAACATCCGCAGCATCTTCTACGTGCCGGAGATGAAACCGTCCATGTTCGACGTGAGTCGTGAGATGGGATCCAGCGTGGCCCTGTACAGCAGGAAGGTCCTGATCCAAACCAAAGCCGCGGACATCCTTCCCAAGTGGCTGCGCTTCCTACGAGGCGTTGTGGACAGCGAGGACATCCCTCTGAACCTCAGCCGAGAGCTGCTGCAGGAAAGCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25541 lncRNA downstream 3456 4443698 ~ 4443924 (-) True G17129
TU25262 lncRNA downstream 4111 4442811 ~ 4443269 (-) True G16974
TU25233 lncRNA downstream 50347 4395201 ~ 4397033 (-) True G16950
TU25232 lncRNA downstream 76296 4369725 ~ 4371084 (-) True G16949
TU25209 lncRNA downstream 131809 4315181 ~ 4315571 (-) True G16933
TU25572 lncRNA upstream 9817 4458698 ~ 4460036 (-) True G17142
TU25573 lncRNA upstream 9817 4458698 ~ 4459135 (-) False G17142
TU25576 lncRNA upstream 28426 4477307 ~ 4931837 (-) True G17143
XR_006250419.1 lncRNA upstream 106171 4555052 ~ 4558148 (-) True LOC122341092
XR_006250411.1 lncRNA upstream 114368 4563249 ~ 4564021 (-) True LOC122341087
XM_043234138.1 mRNA downstream 133121 4278495 ~ 4314259 (-) False glis2b
XM_043234137.1 mRNA downstream 159120 4278495 ~ 4288260 (-) True glis2b
XM_043234136.1 mRNA downstream 205684 4215851 ~ 4241696 (-) True vasnb
XM_043234155.1 mRNA downstream 293422 4146684 ~ 4153958 (-) True dnaja3a
XM_043234379.1 mRNA downstream 325853 4114379 ~ 4121527 (-) True LOC122341056
XM_043234290.1 mRNA upstream 100806 4549687 ~ 4568305 (-) True LOC122341001
XM_043234213.1 mRNA upstream 124466 4573347 ~ 4588316 (-) True LOC122340945
XM_043234221.1 mRNA upstream 124467 4573348 ~ 4588316 (-) False LOC122340945
XM_043234226.1 mRNA upstream 124469 4573350 ~ 4588042 (-) False LOC122340945
XM_043234206.1 mRNA upstream 124689 4573570 ~ 4588316 (-) False LOC122340945
TU25236 other downstream 39683 4403097 ~ 4407697 (-) True G16953
TU25102 other downstream 459949 3986240 ~ 3987431 (-) False LOC122340684
TU25103 other downstream 461713 3984667 ~ 3985667 (-) False LOC122340684
XR_006250503.1 other downstream 583529 3851352 ~ 3863851 (-) False LOC122341931
XR_006250494.1 other downstream 963931 3473444 ~ 3483449 (-) False LOC122341810
TU25560 other upstream 1434 4450315 ~ 4453135 (-) True G17133
XR_006250404.1 other upstream 154869 4603750 ~ 4605565 (-) False LOC122341034
TU25607 other upstream 229703 4678584 ~ 4679783 (-) True G17167
TU25669 other upstream 395199 4844080 ~ 4848917 (-) False LOC122342176
TU25683 other upstream 416482 4865363 ~ 4882329 (-) False LOC122342176

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01030818_00001287_00001442.mRNA True 156 mRNA 0.56 1 CI01030818 1287 ~ 1442 (+)