RNA id: TU25103


Basic Information

Item Value
RNA id TU25103
length 847
RNA type TUCP
GC content 0.47
exon number 3
gene id LOC122340684
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3984656 ~ 3987431 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTTAAGTATATAGTAATGATATTCATATTGCTCATATTGTCATTGTCTTGTTAATTTAACTAAGCTAAGGTCCACAATGAGATTGACCAAGTGATCGGTGGACGTCAGCCAGTGGTGGAAGACAGGAAGAACTTACCATATACAGATGCTGTGATCCATGAAACTCAGAGATTTGGAAATATATCACCCATCGGTTCCCCGCGTCGCACCACCTGTGATGTTCACCTGAACGGATATTTCATAAAGAAGggtacCAGTGTGTGGCCTCTATTGGTATCTGTACTTATGGATGAAAATGAGTGGGAAACTCCTGACCGCTTCAACCCAGGACACTTCCTAAATAAGCAGGGCCAGTTTGTCAAAAAGGACGCCTTCTTGCCCTTCTCTGCAGGTCGCAGGGTTTGTCTTGGAGAGGGTTTGGCCAGGATGGAGCTCTTCCTGTTCTTCACCTCCCTTCTTCAGCATTTCCGCTTCACTCCTCCTCCTGGAGTGTCTGAAGATGATCTGGATCTCAAACCAGTCGTGGGCTTCACCCTGAACCCGGCCCAACACAAAATGTGCGCAGTCAAGCGGTCTTAACCTGCTATATTTGCTACACTTTATGTCtggtttgcttttgttttgttcgcTTGTATACCGCATTTGTGTTCATtcagtgttcattactttttAGATGATACCTATAGTGCCTTTGCTTTTCTCTACAAAAGCGTGTAAATACATCTGTCAATTTAAaatcatgcaaatatatttgGTAAAACTTATGATAGCGCTTAAATTGCATTGCCTACAGATGCTTCTTAAAAGATGACTGATATTCAATAATACAatgcttaaataaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250532.1 lncRNA downstream 197802 3783737 ~ 3786865 (-) True LOC122342142
TU25026 lncRNA downstream 362798 3621489 ~ 3621869 (-) True G16815
TU24978 lncRNA downstream 457819 3503008 ~ 3526848 (-) True G16779
TU24980 lncRNA downstream 459429 3475325 ~ 3525238 (-) True G16780
TU25171 lncRNA upstream 151451 4137118 ~ 4138203 (-) True G16901
TU25199 lncRNA upstream 248708 4234375 ~ 4277855 (-) True G16926
TU25205 lncRNA upstream 279544 4265211 ~ 4267492 (-) True G16930
TU25204 lncRNA upstream 281036 4266703 ~ 4267492 (-) False G16930
TU25209 lncRNA upstream 329514 4315181 ~ 4315571 (-) True G16933
XM_043234256.1 mRNA downstream 2752 3980147 ~ 3981915 (-) False LOC122340986
XM_043234265.1 mRNA downstream 2752 3980147 ~ 3981915 (-) True LOC122340986
XM_043234302.1 mRNA downstream 7328 3976334 ~ 3977339 (-) True LOC122341012
XM_043234315.1 mRNA downstream 20150 3962269 ~ 3964517 (-) True LOC122341020
XM_043234328.1 mRNA downstream 30628 3952819 ~ 3954039 (-) True LOC122341029
XM_043234141.1 mRNA upstream 6018 3991685 ~ 4001580 (-) False LOC122340658
XM_043234140.1 mRNA upstream 6018 3991685 ~ 4001580 (-) True LOC122340658
XM_043234147.1 mRNA upstream 17067 4002734 ~ 4006487 (-) True LOC122340758
XM_043234145.1 mRNA upstream 25397 4011064 ~ 4019711 (-) False LOC122340716
XM_043234144.1 mRNA upstream 25397 4011064 ~ 4014628 (-) True LOC122340716
XR_006250503.1 other downstream 120816 3851352 ~ 3863851 (-) False LOC122341931
XR_006250494.1 other downstream 501218 3473444 ~ 3483449 (-) False LOC122341810
TU24952 other downstream 665603 3315438 ~ 3319064 (-) False LOC122333478
TU24533 other downstream 1330637 2649842 ~ 2654030 (-) True G16478
XR_006250470.1 other downstream 1344576 2631782 ~ 2640091 (-) False nup85
TU25102 other upstream 573 3986240 ~ 3987431 (-) False LOC122340684
TU25236 other upstream 417430 4403097 ~ 4407697 (-) True G16953
TU25544 other upstream 461713 4447380 ~ 4448881 (-) True G17131
TU25560 other upstream 464648 4450315 ~ 4453135 (-) True G17133
XR_006250404.1 other upstream 618083 4603750 ~ 4605565 (-) False LOC122341034

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU184435 False 1523 lncRNA 0.46 4 CM030140.1 20666083 ~ 20670169 (+)