RNA id: TU184435


Basic Information

Item Value
RNA id TU184435
length 1523
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id G146596
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20661926 ~ 20670169 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAATATACACATAAGAGTGATACTCCTCAAATCTTTAAGAGTGAAATTTGTTAAATACATCACTATAACAAATGCGATCTTTGTCTGCTGGTTCAGCGAGGCACTGCACAGAGCCTGAAGGGCTTTGGGCACAGTGTAGTTCCCATCCTGAACTCCAGGCTGGGCTCCTCTCCAGGAGGGGCAGTGAAGGTGAACCTCTGGAGAAAGGAGGTGAAGAACAGGAAGAGCTCCATCCGAGCCAATGATTCCCCCAGACACACCCTCTTCCCTGAAAGAAAAGGGACAAACATAGAATAAAGTTTTGATCTAAGGAGGACACACAGCTAATGATTCTGTTCTAGTGTTTAAACGAGctatacaaaatgaaaagacaacaaaCTAAAACAGAGCCTGTAGCATAAACTGCACGCTGAAATAAAGAGTTACCAGCTGAGAACGGCATGAATGCATCTCTTCTCATGAACTTCCCATCAGCGTCCAGAAAGTGTCCTGGGTTAAAAGTATCGGGCGTTTCCCACTCATTCTTGTCAAACAGCACAGAGGTCAAATTCGGAGTCACCAGAGTGCCCTACGCAAAGGGAGGGAGAACAACACACAGTGAGTTACAGCACTGGAGGCACGGAGGCAAAGCAAATCAGTGTATCACTCCTCACCTCACCTTTGGAATAAAATACCCTCTCAGTGTAATATCTCTTGTAGTCCTACGGGGAATATTCAGAGGAACAATGTTGCCGAATCTCTGGACTTCATGGATCACAGCGTCAGTGTAGGGCATCTTGGCTCTGTCGGCCATGGAGGGCGGGCGCCCCTGTCCCACCACTCGGTCGATCTCAGCCTGGACCTTCTGGATCTCTGGGTATTTGATCATGTAGAGGAGACCCCAGCGCAGAGTGGTTGACGTGGTTTCTGTCCCGGCCGCAAACAGATCCAGAGTGCAAAAAACTAAGGTCTCCTCATCAAAACCACCATCTACATTTTCTTGACACTAAAGGcTTTTTCATCTCAGTCAGGTAGCAGTCGATGTAGTCGCGGGGGGCTGATGGGTCCCAgtcctgtttgtgttgtttaatcTGAGACTTCACAAAAGACATCACAGCCTCCCAGTGGGAGAAAATGTTGCTGTGTGGCCCAGGAATTCTTCTCATAACCCATGGGAACATATTGTACATCTGcattgttaataaaacaaaatagtaattATTGAAAAAGGATACAACACAAGCTGAGGCAGAGTAGTTGAATTTCTTGCTCATTTCCATGGGTAGACAGATATCTGTCTGAGCAGCAGTTCAGTGTGCTGTCTGCACTTTTCACCTGatatatatttggaaataataattaaatcaagaaaagaGTTCTTACATGTGCCCAAAAGCTCCCATCTAAAAAGATAGCTTCATCAATTAACCTCAGCAGATCCTGGAAGCGACTATCGCTGTACTCAAACCGGTCCCCGAACACCACAGAGCAGATGATGTTGGACACAGCATTGTTGATTGTGAACTGGGGGTCAAACGGTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184426 lncRNA upstream 4483 20642772 ~ 20661600 (+) True G146591
TU184422 lncRNA upstream 10310 20642268 ~ 20655773 (+) True G146590
TU184369 lncRNA upstream 332961 20316007 ~ 20333122 (+) True G146544
TU184340 lncRNA upstream 481440 20182354 ~ 20184643 (+) False G146519
TU184288 lncRNA upstream 556542 20108102 ~ 20109541 (+) True G146486
TU184442 lncRNA downstream 12456 20682625 ~ 20683984 (+) True G146599
TU184443 lncRNA downstream 12456 20682625 ~ 20738321 (+) False G146599
TU184498 lncRNA downstream 80135 20750304 ~ 20750938 (+) True G146640
TU184567 lncRNA downstream 185542 20855711 ~ 20855918 (+) True G146701
TU184569 lncRNA downstream 197037 20867206 ~ 20867406 (+) True G146703
AMCG00005279 mRNA upstream 38152 20597743 ~ 20627931 (+) True AMCG00005279
AMCG00005278 mRNA upstream 70329 20589746 ~ 20595754 (+) True AMCG00005278
AMCG00005274 mRNA upstream 176419 20484932 ~ 20489664 (+) True AMCG00005274
AMCG00005272 mRNA upstream 386506 20253009 ~ 20279577 (+) True AMCG00005272
AMCG00005273 mRNA upstream 456626 20208791 ~ 20209457 (+) True AMCG00005273
AMCG00005286 mRNA downstream 29588 20699757 ~ 20702472 (+) False AMCG00005286
AMCG00005287 mRNA downstream 71009 20741178 ~ 20742301 (+) True AMCG00005287
AMCG00005288 mRNA downstream 93463 20763632 ~ 20768980 (+) True AMCG00005288
AMCG00005282 mRNA downstream 111139 20781308 ~ 20794020 (+) True AMCG00005282
AMCG00005280 mRNA downstream 127399 20797568 ~ 20803197 (+) True AMCG00005280
TU184405 other upstream 141264 20521649 ~ 20524819 (+) True G146575
TU184347 other upstream 386297 20273513 ~ 20279786 (+) False AMCG00005272
TU184341 other upstream 481440 20182354 ~ 20184643 (+) True G146519
TU184056 other upstream 1086276 19579573 ~ 19579807 (+) True G146305
TU183561 other upstream 2894558 17765257 ~ 17771525 (+) True G145932
TU184446 other downstream 29317 20699486 ~ 20702404 (+) True AMCG00005286
TU184526 other downstream 127289 20797458 ~ 20803180 (+) False AMCG00005280
TU184679 other downstream 667263 21337432 ~ 21340712 (+) True G146790
TU184762 other downstream 900361 21570530 ~ 21572321 (+) True AMCG00005329
TU184830 other downstream 1010539 21680708 ~ 21704394 (+) True AMCG00005340

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU25103 False 847 TUCP 0.47 3 NC_056701.1 3984667 ~ 3985667 (-)