RNA id: TU184288


Basic Information

Item Value
RNA id TU184288
length 1440
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G146486
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20108102 ~ 20109541 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatttgtatattttattgtatgcaatgcaaaacagtaaacaggTCTGGTCGTGGAAATGGTGGAGGGTGTTGCTCTAATGAGACAGGTAGGAGATAGTGAACTGCATGGGGGTGTGAAAGCTATTGCTGAAACGCAACAAAGCAAGACAAGTGGCTAAATACAAACCATTTCCTGGCCCAGAGGCTGAAGACGTCATTTGTGGTCATTACTGACGGGGTCAAATTGCTCGTTCATGTACACTGTCCTGTGAGGATGTTGGCATCCCTCTTTACCCCACACCCAGAGCTCTGATGAAGATTGGGGATGGGGTGTGCTTATTTCTGACAGTTCAGAGAATATGAATAATGCTGTCTGTAATTCTGTATTAATAGACTATACCATGTGGTtcaaatggatttgaaaggggGGACATTTTAAGCTTTACATAAATCAGAAGTGGAGGATTTGGCAGAACCAACCCttctatttgtaattattattaaaactgatTTGATTGACTAggcactaataataataaatcattgagAGATTCAGTAGTAACTAGAAAAATCCCCATCAAAGCTTAAGTGTTTAAATGAGGAAATTGCAATCAGGGATGGCAAGATATCAGTGCCCCTCAGAAAAGATGCTAACAGTGCAGATGAAGGAGCAATTTCCCCTCAAGTCTTGTCCTCCTGTGTCAGCTGCTCCAAACCGGTGGACCTGTGGAAAAATCCTGTACCTGGAGAGTGTCTGTGTCCTGAGAAATAGTCTGATCTGTGGATTGGAGAAGCCCAATTGGTTTTACCACTGTTGATGTTAGAGGACTACATTCAAAAGTCAGCCTTTGAAATGTTTGACCTGTTCAGCAAAGACAGCAAGGGAACAGGATTCTTATTCACTGCGGATTCATATTGTCTGGAGCAGGTCTGGAATAAACCCAGAACCATAAAACTCAGTTTCATTCAAAATTGACTGATATAAACTGCATATAAGAAGTCATCACACTGATTAAatagtttcagtttcagccaaCAGTAAAATACCAGATCAGTATTAGTATGAAAGAAGATTCAAAAGTGGTTGTCGTTAAGtctgtactttattttcatgaagaagaaaaacaaaaacagtcagtTATATCCTTCAGTtaatcaataatataataatcaataatacaataatcttgtaaaatgtataatgaagtAGGAAGTAGAATGACTCCAGATGAGTTTGCTATTTCAGACGCTTTGATAAGCATGTACACGTCTGACATTATTCACATATATGTCCTAGTTCATAAGCAGAAGCATTAAAcctcaatgtattttaatacacagaGATCAGGATATTATCCTCAAAGCAGACTTCTAGAGTAAAATCGATCCTCTTACCATAATTATCTTCATAATGTCTCTAAATCCCAAATAATGGTAAAAAGAGAGCTGTCCTTCTGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184248 lncRNA upstream 82041 20024173 ~ 20026061 (+) True G146450
TU184234 lncRNA upstream 96967 20007416 ~ 20011135 (+) True G146442
TU184126 lncRNA upstream 347311 19760152 ~ 19760791 (+) True G146350
TU184058 lncRNA upstream 515008 19592750 ~ 19593094 (+) True G146307
TU184057 lncRNA upstream 522446 19585448 ~ 19585656 (+) True G146306
TU184340 lncRNA downstream 72813 20182354 ~ 20184643 (+) False G146519
TU184369 lncRNA downstream 206466 20316007 ~ 20333122 (+) True G146544
TU184422 lncRNA downstream 532727 20642268 ~ 20655773 (+) True G146590
TU184426 lncRNA downstream 533231 20642772 ~ 20661600 (+) True G146591
TU184428 lncRNA downstream 533231 20642772 ~ 20712220 (+) False G146591
AMCG00005255 mRNA upstream 44705 20051949 ~ 20063397 (+) True AMCG00005255
AMCG00005253 mRNA upstream 56985 20047383 ~ 20051117 (+) True AMCG00005253
AMCG00005254 mRNA upstream 88581 20015938 ~ 20019521 (+) True AMCG00005254
AMCG00005242 mRNA upstream 131026 19967679 ~ 19977076 (+) True AMCG00005242
AMCG00005244 mRNA upstream 154436 19935353 ~ 19953666 (+) True AMCG00005244
AMCG00005262 mRNA downstream 19688 20129229 ~ 20139948 (+) True AMCG00005262
AMCG00005261 mRNA downstream 31681 20141222 ~ 20148284 (+) True AMCG00005261
AMCG00005260 mRNA downstream 63192 20172733 ~ 20175331 (+) True AMCG00005260
AMCG00005273 mRNA downstream 99250 20208791 ~ 20209457 (+) True AMCG00005273
AMCG00005272 mRNA downstream 143468 20253009 ~ 20279577 (+) True AMCG00005272
TU184056 other upstream 528295 19579573 ~ 19579807 (+) True G146305
TU183561 other upstream 2336577 17765257 ~ 17771525 (+) True G145932
TU183002 other upstream 4723490 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 7326932 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 8444734 11662681 ~ 11663368 (+) True G144677
TU184341 other downstream 72813 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 163972 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 412108 20521649 ~ 20524819 (+) True G146575
TU184436 other downstream 552385 20661926 ~ 20670169 (+) True G146596
TU184446 other downstream 589945 20699486 ~ 20702404 (+) True AMCG00005286

Expression Profile