RNA id: AMCG00005253


Basic Information

Item Value
RNA id AMCG00005253
length 1576
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00005253
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20047383 ~ 20051117 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCAGATTCAGTCTAGGGCAGCGGTGTCGCGGCGGTCCGGCACACAGGCACACGGCTGCGGATCCGATACGACTGTGGAAACACGAACACACCCGTGAGGATGAGCACCATGTTCGCGGACACCATCCTGATCGTGTTCATATCCGTGTGCACGGCTCTGCTGGCGGAAGGTATAACGTGGGTGCTGGTCTACAGGACGGACAAGTACAAGAGGCTGAAGGCAGAGGTGGAGAAGCAGAGTAAAAAGCtggagaagaagaaggagaccATCACCGAGTCGGCCGGACgacagcagaagaagaaaatcgAGAGACAGGAGGAGAAGctgaagaacaacaacagagaCCTCTCCATGGTCCGGATGAAGTCCATGTTCGCCATCGGGTTCTGCTTCACCGCTCTGATGGGCATGTTCAACTCCATATTCGACGGCCGCGTTGTGGCCAAGCTGCCCTTCGTGCCCCTGTCCTACATCCAGGGCCTGTCTCACCGCAACCTGCTGGGCGAGGACTACACGGACTGCTCCTTCATCTTCCTCTACATCCTCTGCACCATGTCCATCAGACAGAACATCCAGAAGATGCTGGGTCTGGCTCCGTCCCGCGCGGCCACCAAACAGGCCGGGGGTTTCCTGGGGCCGCCGCCGCAGGCTGCCAAGTTCTCGTAACCCTGCGCCGTGGTTGCAGCCCAGCCTACACACTGCCAGAGCAGAGAcgggggaggagagagatggagagagagatgggacaGGCTGCCCTCTTCTGTGAAGAACACGAATCACACCCTCGAGTTATTAAACGGTCCAGCTGCTGGACCTGGTGCTACAGACATTTCTGTGCTTTGCCATCGATTTTACCTTTTAGTGTTTCTTATCTGCAGGACTCGAAAGCCCGatggtattgttttttgtaataataaaccGAAATGACCCAGCTTTACCAAGTCCTTGTTAAATTACTGGCATATCAGTACTAGTAGTTTGTCCTACATTGTTTTAAACCGTACAGACAGATTTGTGCATTCAATAATGTGACCTGCAGGCCTAAAAcagtttattgttattattcatgttCTTAAACTATGTCAGTCTTTTACAAGGAGCCACTCTTAGGAGCcattttattagtttaataaCCGACCTGTTTGTTAGAGGTAACCGAACACTCAGCTCGTGTATCTGTCCGTCTGTGGGACAACGCACCGGACTACTGCAGCAGAAAGCCGTGGCCGGGGGGGCAGGTATATGGCTGAGTCGTCTGTGTTTTTCCTCCCCCATGTGTGATTTTATTAGTCTGTTCCCTTCCCAGAGGTACTTATTAAATGAagatacatgttttaataaataaactaaggaagaaaaacaaaagaggagGTCCCCATAAGTGTTGTGTGTTCATTGTGTCAGAAGAAATGATCCATTACCGATGCTCCACTCATATTCAGAGTGCTGAACACACTGCACCGTGTGGACTGTTTTTGGAATCTGAAATTGAATATTTCAGGTGTGAGTATTGGGATATGGAGGGCGGGAATATTATAGGAATTCTGAGCCCTATAAACGACATGCTATGGAAC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K21891 TMCO1; calcium load-activated calcium channel

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184248 lncRNA upstream 21322 20024173 ~ 20026061 (+) True G146450
TU184234 lncRNA upstream 36248 20007416 ~ 20011135 (+) True G146442
TU184126 lncRNA upstream 286592 19760152 ~ 19760791 (+) True G146350
TU184058 lncRNA upstream 454289 19592750 ~ 19593094 (+) True G146307
TU184057 lncRNA upstream 461727 19585448 ~ 19585656 (+) True G146306
TU184288 lncRNA downstream 56985 20108102 ~ 20109541 (+) True G146486
TU184340 lncRNA downstream 131237 20182354 ~ 20184643 (+) False G146519
TU184369 lncRNA downstream 264890 20316007 ~ 20333122 (+) True G146544
TU184422 lncRNA downstream 591151 20642268 ~ 20655773 (+) True G146590
TU184426 lncRNA downstream 591655 20642772 ~ 20661600 (+) True G146591
AMCG00005254 mRNA upstream 27862 20015938 ~ 20019521 (+) True AMCG00005254
AMCG00005242 mRNA upstream 70307 19967679 ~ 19977076 (+) True AMCG00005242
AMCG00005244 mRNA upstream 93717 19935353 ~ 19953666 (+) True AMCG00005244
AMCG00005247 mRNA upstream 162832 19879542 ~ 19884551 (+) True AMCG00005247
AMCG00005245 mRNA upstream 188769 19855589 ~ 19858614 (+) True AMCG00005245
AMCG00005255 mRNA downstream 832 20051949 ~ 20063397 (+) True AMCG00005255
AMCG00005262 mRNA downstream 78112 20129229 ~ 20139948 (+) True AMCG00005262
AMCG00005261 mRNA downstream 90105 20141222 ~ 20148284 (+) True AMCG00005261
AMCG00005260 mRNA downstream 121616 20172733 ~ 20175331 (+) True AMCG00005260
AMCG00005273 mRNA downstream 157674 20208791 ~ 20209457 (+) True AMCG00005273
TU184056 other upstream 467576 19579573 ~ 19579807 (+) True G146305
TU183561 other upstream 2275858 17765257 ~ 17771525 (+) True G145932
TU183002 other upstream 4662771 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 7266213 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 8384015 11662681 ~ 11663368 (+) True G144677
TU184341 other downstream 131237 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 222396 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 470532 20521649 ~ 20524819 (+) True G146575
TU184436 other downstream 610809 20661926 ~ 20670169 (+) True G146596
TU184446 other downstream 648369 20699486 ~ 20702404 (+) True AMCG00005286

Expression Profile