RNA id: AMCG00005279


Basic Information

Item Value
RNA id AMCG00005279
length 3384
RNA type mRNA
GC content 0.46
exon number 22
gene id AMCG00005279
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20597743 ~ 20627931 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAACTGTAATGAATCTGTCTGGCGTGTCCCCATATTGGCTTTGGCAGTGGATGGACTTCCAGGGGCTCCTGCTGACGCTGTCTGTGCTGCTGGTAGTGAAGATCATCAGGGATCGGCCTCCCAAAAACTTCCCTCCTGGCCCCCTTGCTATACCTTTTTTAGGAAGTGCTTTAAGCATCAATCCCAAAGACCCATCTGGTTCTTTCTGTAAGtTGTTAGGTCAGTATGGGGACGTGGCAAAGATGTCCATCGGTGGTCAGAGGCTTGTGCTTCTCTCAGGCTCGAAGACCATCAGAGAGGTTTTTGTTGAGAAAGGAGATTTCTTCACGGATCGCCCGGTATACCCCATCATCGAAAGACTGTTCAAAGGCCTTGGTAATTACATCGACTTTGCTTTATTCGGAGTGGCCTATATGAGAAAACCCTTTGATCCTCACTACTTACTTCACAACGGAGTGTCGAACATCATCTGCTCCCTGGTTTTTGGGCACAGGTTTGAATACGACGACGGACACTTTCTCGAGATGCTGAAGAACTTTGAAGAAATCATCCAACTGCCGGTAACAATTTGGGGTCAGTTGTACAACATGTTCCCGCGTTTAATGAGCCTTTTACCCGGGAGACACCAGTCAACCTTTTCAACGAGTAAGAAAATCATACGGTTTATTGAAGACGAGGTGCAGAAACACAAGGAGGACTGGAATCCATCCGAGCCCAGAGACTATATTGACTGCTACCTTGAGGAAATTGAAAAGTGTAAAGACGACTCCTCTGGATTCAATGAGGAGAATCTTCTTTACTGTGTGATAGATTTATTTGCCGCTGGAACCGACACTCTATCCAAAACTCTGCTCTGGGGTCTTCTGTACATGaaAGCTGTAATGAATCTGTCTGATGTGGCACCGTATTGGCTTTGGCAGTGGATGGATATCCAGGGGCTTCTGatgatgctgtgtgtgtttctgataGTGAAGACCATCAGGGACAGGCCTCCCAGAAACTACCCTCCTGGCCCCTTTGGTTTACCTGTTATAGGAAGCCTTTTATGCATCAGTCCCAGCGACCCCTTTGGTTATTTTTGCAAGCTTTTAGGTGATTATGGAGACATCATGAGCCTTTCTGTCGGCAATATGCCTATTTTGCTTCTCTCGGGATCAAAGACCCTTAGGGAAGCCTTTGTTGAGAAAGCAGATGCCTTCACAGATCATCCGTTATACCCCATAAATAAAAGACTGTGCAACGGACTGGgCAAACCCTTCGAACCTCACAACATACTTCACAATGCGGTGGGCAACATCATCAGCTCACTGGTGTTTGGGCACCGATTTGAATACGATGACGGACACTTTCATGAGATGCTGAGGATATGTGGGGAAATATTCCAACTGCCATTCACACTTTGGGGTCGGATCTTCACGGTGTGTAAACTCACCTGGTGGAGGGAGGTCAGaaagttgaaacaaaatacaatggcTGTAATGAATCTGTCTGATGTGGCACCGTATTGGCTTTGGCAGTGGATGGATATCCAGGGGCTTCTGatgatgctgtgtgtgtttctgataGTGAAGACCATCAGGGACAGGCCTCCCAGAAACTACCCTCCTGGCCCCTTTGGTTTACCTGTTATAGGAAACTTTTTAAACATCAGTCCCAGTGACCCCTTTGGTTCTTTTTGCAAGATTTTAGGTGATTATGGAGACATCGCAAGCCTATCTCTTGGGAATAAGCGTTTTTTGCTTCTCTCGGGATGGAAGACCCTTAGAGAGGCCTTTGTTGAGAAAGCAGATGCCTTTACAGATCGTCCATCATACCCCATAAATAAAAGACTGTGCAAAGGACTggGTAAACCCTTCGAACCTCACAACATACTTCACAATGCGGTGGCCAACATCATCTGCTCACTGCTATACAATAGTTTCCCAACTTTAATGGAGTTTTTACCTGGAAAACATCAGTCAACGTTTTCAAACAGCAAGAAAATCAAGATGTTTATTCAAGAGGAGGtgaagaaacacagagagacctGGGATCCATCAGAGCCCAGAGATTATATAGACTGCTACCTTGAGGAAATCAAAAAGTGTGATGACCACACATCTGGATTCAATGAGGAGAATCTTCTTTACAGTGTAATAGACTTGTTTGCAGCTGGAACAGAAACCACTTCCAACACTCTGCTCTGGGGTCTTTTATACATGGCTAAATATCCTGAAATTCAAGTGAAAACCGAGAAGCAATCCAGCTCACGTCTGCATGGACTCTCTTCAGGGTTTGTGTCACTGCCTCTGGCAATGGCTGGATGTCCGAAGCGCTCtgatatttttaaaaacagggcACCGAGAAATTTCCCCCCAGGCCCGGTGTCTCTGCCCCTCTTGGGGAACCTGTGGGGGTTTGATTTGGAGAAACCTCACCTGTACGTGACTCAGCTTGCAGAAAAATATGGCGACGTGTTTAGCATTCGGCTGGGAAGTcgtgttgtttttgtgaatgGATATAAACTGGTCAAGGAAGCCCTGGTGAACCAGGGAGACAGTTTCACTGACCGGCCGAAGCTCCCAGCAGCTGACGTGCTCGTCAAAAACCGAGGTCTGGTGATGTCCAACGGCTACTCGTGGAAACAGCAGAGGAGATTTACTCTTACGACTCTCAGGAATTTCGGAGTGGGCAGGAAGAGCCTGGAGGACAGGATAGTGGAGGAGAGCAGGTTCCTGAATGAAGCCATGGAGGATGAGCAAGGAAAGCCATTTGACCCTCAATATGTTTTCTCTAATGCCATCTCCAACATCATCTGTTCTGTGGTGTTTGGTGACCGCTTTGAGTACACCGACACTCACTTTCTGGAGCTGCTGCATTTGATTGATGAGACTCTGAAGCTACAGGGGAGCACATGGTTTCAGATATACAACGCATTCCCCCAAATAATGAAGAGGATTCCCGGGCCGCACAACAAAGTCTTTTCAAACTGGGAAACTGTGATCGCCTTTGTGAAATCCAAGATAGATGCTCACAAGGTGGACTGGGACCCCTCCTGTCCAAGGGACTACATTGACTGCTACCTGGATGAAATTGAGAAGaacaAAGATGATCCAGCGGCAAGATTTCAGGAGGACAACATGTGTTTCTGCGTTTTTGATCTCTTTGTGGCCGGAACCGAAACCACAGCAACCACTCTGCGCTGGGGACTCCTATACATGATCAAATACCCAGAGATACAGACAACAGAGTTCCCAGCAGCTTTGAACAATTATTTATGGGATTGGCTGGATGTTCGAGCAATGTTGCCATTTGTCCTTGTTTTCTTGACAATTGCTGACTTATTCAGGAGAAGAACTTCTAAAAACTTTCCTCCTTGTGTTTGGGGGCtgccctttttttaa

Function

GO:

id name namespace
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184369 lncRNA upstream 264621 20316007 ~ 20333122 (+) True G146544
TU184340 lncRNA upstream 413100 20182354 ~ 20184643 (+) False G146519
TU184288 lncRNA upstream 488202 20108102 ~ 20109541 (+) True G146486
TU184248 lncRNA upstream 571682 20024173 ~ 20026061 (+) True G146450
TU184234 lncRNA upstream 586608 20007416 ~ 20011135 (+) True G146442
TU184422 lncRNA downstream 14337 20642268 ~ 20655773 (+) True G146590
TU184426 lncRNA downstream 14841 20642772 ~ 20661600 (+) True G146591
TU184428 lncRNA downstream 14841 20642772 ~ 20712220 (+) False G146591
TU184435 lncRNA downstream 38152 20666083 ~ 20670169 (+) False G146596
TU184442 lncRNA downstream 54694 20682625 ~ 20683984 (+) True G146599
AMCG00005278 mRNA upstream 1989 20589746 ~ 20595754 (+) True AMCG00005278
AMCG00005274 mRNA upstream 108079 20484932 ~ 20489664 (+) True AMCG00005274
AMCG00005272 mRNA upstream 318166 20253009 ~ 20279577 (+) True AMCG00005272
AMCG00005273 mRNA upstream 388286 20208791 ~ 20209457 (+) True AMCG00005273
AMCG00005260 mRNA upstream 422412 20172733 ~ 20175331 (+) True AMCG00005260
AMCG00005286 mRNA downstream 71826 20699757 ~ 20702472 (+) False AMCG00005286
AMCG00005287 mRNA downstream 113247 20741178 ~ 20742301 (+) True AMCG00005287
AMCG00005288 mRNA downstream 135701 20763632 ~ 20768980 (+) True AMCG00005288
AMCG00005282 mRNA downstream 153377 20781308 ~ 20794020 (+) True AMCG00005282
AMCG00005280 mRNA downstream 169637 20797568 ~ 20803197 (+) True AMCG00005280
TU184405 other upstream 72924 20521649 ~ 20524819 (+) True G146575
TU184347 other upstream 317957 20273513 ~ 20279786 (+) False AMCG00005272
TU184341 other upstream 413100 20182354 ~ 20184643 (+) True G146519
TU184056 other upstream 1017936 19579573 ~ 19579807 (+) True G146305
TU183561 other upstream 2826218 17765257 ~ 17771525 (+) True G145932
TU184436 other downstream 33995 20661926 ~ 20670169 (+) True G146596
TU184446 other downstream 71555 20699486 ~ 20702404 (+) True AMCG00005286
TU184526 other downstream 169527 20797458 ~ 20803180 (+) False AMCG00005280
TU184679 other downstream 709501 21337432 ~ 21340712 (+) True G146790
TU184762 other downstream 942599 21570530 ~ 21572321 (+) True AMCG00005329

Expression Profile