RNA id: XM_043234145.1


Basic Information

Item Value
RNA id XM_043234145.1
length 2167
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC122340716
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4011064 ~ 4019711 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGGAGCTCAGAGAGAAAATGGCTTTTGTGGAGTCTCTGCTGCAGTTTCCCAGCACAGGTACATTACTGGGAGCTTTGCTGTTGCTTCTGGTTTTGTATTTGCTTTCTTCTGGATCCAAATCTCAGAAAGGAGGGAAAGAGCCACCGGGACCAAAACCGCTTCCACTGTTGGGGAATCTGCTGAGCCTTGACCTCACAAGACCCTTTGATGACTTTTTTGAGCTCTCTAAAACCTATGGGAACGTATTCCAAGTCTTTCTGGGTCCCAAAAAATCTGTGGTCCTAGTTGGATACAAAACTGTCAAAGAAGCTCTTGTGAACCATGCAGAAGAGTTTGGCGAAAGAGATATTGCTCCAGGTTTCAGGTTATTAAACGAAAACCATGGGATCCTGTTCTCCAATGGAGAGAACTGGAAAGAGATGAGACGCTTCGCTCTCAGTAACCTGAGAGACCTTGGGATGGGAAAGAGAGGAAGTGAAGAGAAAATCGTAGAGGAAATTCAGTATCTGAAAGGAGAGTTTGATAAGTTTGAAGGAAAACCCTTCGACACGACACAGCCTGTGAACTACGCCGTGTCAAACATCATCTCATCTATCGTGTACGGCAGCAGATTTGAATACACAGACCCCCAGTTCACTGAAATGGTCGACAGAGCAAACGAAAATGTCCGGGTCGGTGGATCTGCATCAATGATGCTCTACAACATATTCCCATGGTTGGGTCCattcctgaaaaacaaaaggaTTATTTTATACAATGCTCTGCAAAACAGACAACAGATGACAAAGCTGATCAATGGGCTTCTGGAGTCTCTGAATCCACAGGATCGCAGAGGATTTGTTGACTCCTTTCTTATTCGCAAACAAAGTGAAGAGAAATCTGGCAAGAAGGACTCATATTTTCATCAGGACAATCTTATGGTGTCTGTGGCAAATCTGTTTGTTGCTGGTACTGACACCACAGGAACGACTCTGCGCTGGGGTCTGATGCTCATGGCCAAATACCCTCATATACAGGATCGAGTTCAGGAGGAGATTGACCGAGTGATCGGTGGACGTCAGCCAATGGTGGAAGACAGAAAGAAGTTACCGTATACAGACGCTGTGATCCATGAAACTCAGAGACTGGCAAACATAGTACCCTTGAGTCTCCCTCATATAACCACCTGTGACGTTACCTTCAACGGATACTTCATCAAAAAGGGCACCACTGTTATTCCTCTGCTGACGTCTGTTTTGAAGGATCCAAATGAATGGGAAAAACCAAACAGCTATTATCCAGAACACTTCCTTGATGAGAAGGGACAGTTTGTCAAGAGAGACGCTTTCATACCCTTTTCTGCAGgacgGCGGGTTTGTCTTGGAGAGAGTTTGGCCAGGATGGAGCTCTTCCTGTTCTTCACGTCTCTTCTTCAGAGCTACCGCTTCACGACTCCACCTGGAGTGTCTGGAGATGATCTGGATCTCAAAGGAATAGTCGGGATAACTTTGAATCCGTCCCCACATAAACTGTGTGCGATCAGACGCTCCTgaatgaagaaaatatttttactcgCTCTTTTGAttgaatgtatatatgtaaatactgtGCAGAGCGTGAAACCAAGGACTTctgactaaaattaaataaatatagaaggTTGTAGGCTATTTGCTATATTCTAATTCAATGAATGTTGCTATGTTGCTTTGAGGAAATAAAAAgctataatttgtatttaaataaaccgCAATAGCGACCTCTTGCGAAGCATAAGCGCTATTTCACAGCGCATGCGTAGGAAACGTTTCATgccataattatgacttttataCAGTCAGCAAGCAGCTTTAGGGAATATTAAcaactttatttagtttattgaAATATTCAGCTCTCTGGACTtcctttttgtcattatttgacCTCGgtctattcatttattcaccgTTGTTGTGATGGTAATAGTAGTTTGCTGCTGTATCCTGTCAttatggcattaaaaaaaacacatgcacttCACAAAGGAAATATGCTTTTATGTAACCACTGAATCATACTATATTTAGGGGTGCATTTCAGGTCAGCCAAGAAGTCAGACAATGTATAAGGTTAAATAATATATCCCCttaatgtgttaaataaatttttttggcAAGCCTAATCTCTAATGGCTTTTTAAATATG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250532.1 lncRNA downstream 224199 3783737 ~ 3786865 (-) True LOC122342142
TU25026 lncRNA downstream 389195 3621489 ~ 3621869 (-) True G16815
TU24978 lncRNA downstream 484216 3503008 ~ 3526848 (-) True G16779
TU24980 lncRNA downstream 485826 3475325 ~ 3525238 (-) True G16780
TU25171 lncRNA upstream 117407 4137118 ~ 4138203 (-) True G16901
TU25199 lncRNA upstream 214664 4234375 ~ 4277855 (-) True G16926
TU25205 lncRNA upstream 245500 4265211 ~ 4267492 (-) True G16930
TU25204 lncRNA upstream 246992 4266703 ~ 4267492 (-) False G16930
TU25209 lncRNA upstream 295470 4315181 ~ 4315571 (-) True G16933
XM_043234147.1 mRNA downstream 4577 4002734 ~ 4006487 (-) True LOC122340758
XM_043234141.1 mRNA downstream 9484 3991685 ~ 4001580 (-) False LOC122340658
XM_043234140.1 mRNA downstream 9484 3991685 ~ 4001580 (-) True LOC122340658
XM_043234142.1 mRNA downstream 23655 3984656 ~ 3987409 (-) True LOC122340684
XM_043234256.1 mRNA downstream 29149 3980147 ~ 3981915 (-) False LOC122340986
XM_043234146.1 mRNA upstream 1394 4021105 ~ 4024639 (-) True LOC122340742
XM_043234148.1 mRNA upstream 8179 4027890 ~ 4035098 (-) True LOC122340774
XM_043234074.1 mRNA upstream 18836 4038547 ~ 4077723 (-) True abca3b
XM_043234135.1 mRNA upstream 59797 4079508 ~ 4095295 (-) True ccnf
XM_043234413.1 mRNA upstream 83528 4103239 ~ 4107748 (-) True LOC122341077
TU25102 other downstream 23633 3986240 ~ 3987431 (-) False LOC122340684
TU25103 other downstream 25397 3984667 ~ 3985667 (-) False LOC122340684
XR_006250503.1 other downstream 147213 3851352 ~ 3863851 (-) False LOC122341931
XR_006250494.1 other downstream 527615 3473444 ~ 3483449 (-) False LOC122341810
TU24952 other downstream 692000 3315438 ~ 3319064 (-) False LOC122333478
TU25236 other upstream 383386 4403097 ~ 4407697 (-) True G16953
TU25544 other upstream 427669 4447380 ~ 4448881 (-) True G17131
TU25560 other upstream 430604 4450315 ~ 4453135 (-) True G17133
XR_006250404.1 other upstream 584039 4603750 ~ 4605565 (-) False LOC122341034
TU25607 other upstream 658873 4678584 ~ 4679783 (-) True G17167

Expression Profile