RNA id: XM_043234074.1


Basic Information

Item Value
RNA id XM_043234074.1
length 7088
RNA type mRNA
GC content 0.54
exon number 32
gene id abca3b
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4038547 ~ 4077723 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGAGGAGATCACGTGACCGCGTTTGTTGTGTCCGCACCGCACGGCCGCCGCGCTGCAATGTCATCCTCATCGCCACCGTCTTCCTCGTCGCCGTCGCCCGTATGAGCGCCGCTTCCCGACGGAGCGCGTCCGTGGCGGCTTCGAGCTGATCGAGAAACGCTCGTTCGATGCTTTCCGCCTAAAAGggagccgccgccgccgccggaCCGAAACACGAGCGAAAGGTCCGTGAGTCTGAACAATGGCCGTGTGGCAGCAGTTTGGACTGCTTCTGTGGAAGAACTACATTCAGCAAAAGCGTCAGATCCTGGTCACTCTGGTGGAGATCGCTCTGCCGCTGCTCTTCTCTGCTATCCTGATCGTCCTGAGGCAGAAGGTGTCGTCCATCAACTACCCCAATGCCACGCACTACCACAGCTTCGCTCTGAGCGAGCTGCCGTACCCTCTGTGCTTCCAGGACCTGCAGCTGGCCTACGTCCCTGCCAACGCCAGCGTGGTGCGGCAGATCTCGGAGGACGTGCAGCAGAGCCTGCGGGAGTGCATCCGAACCGTGCGTGGCTTCGAAACAGAGGAGCAGTTTGAGGAGTTCGTGAAAACTGACCCAGAGTCAGGCAAGGTCTTGGCAGCCATCGTGTTTGAGCACCAGTTCACACGCGACGACGAGCCGCTTCCTCTTCAGGTCAGCTATCATCTGCGCTTCACGTACAGCCCCAGAAACGCTCCGGCGCGTGAGAAGTCCGAGCTCAACCCCAACAACGACCTGGACTGGCACACGCTCAGTCTGTTCCCGCTGATCCAGCTGCCCGGGCCCAGAGAGCAGCACGAGCCACGCGGGGGCACCCCAGGATATTACCGCGAGGGCTTCCTTCAGGTGCAGCACGCGGTGGACCGGGCCATCATGAAGGCCTACAACAGCACGGCGGCGGCGGCCCTCCTCAAGCGAGCCCAGGTGCTGCTGGCCCGCTTCCCTTACCCAGCGTTCATCTACGACGTCTTCATCCTGGCCATCCAGAACCAGCTTCCCCTGCTTCTGGTGCTCAGCTTCACATACACCTCTCTGAACATCGTCCGCGCCGTGGTGCAGGAGAAGGAGAGGAAGCTGAAGgagTACATGCGCATGATGGGCCTCAGTAACTGGTTGCACTGGAGCGCCTGGTTCCTCatgtttttcctcttcctctgcatCTCCATCTTCTTTGTTACCGTACTTATCTGCGTCAAGGTGAGTCCTAACGGGGCGGTGTTGACCTACAGCGACCCCACGCTGGTGTTCGTCTTCCTGCTGGTGTTCGCCGTGTCCACCATCAACTTCAGCTTCATGATCAGCTCCTTCTTCTCCAGAGCGAATGTGGCGGCGGCGGCGGGCGGCTTCATCTACTTCCTGAGCTACCTGCCGTACGTCTTCCTGTGGCCCCGCTACGACCTGCTCTCGCACGCACAGAAAGTCTCCGCCTGCCTCATCTCCAACGTGGCCATGGCCATGGGAGCCCAGCTGATCGGCATGTTCGAGGGCAAAGGGACGGGCGTCCGGTGGAGCAACCTGTTTGAGCCGGTGACGGTGGACGATGACTTCTCTCTGGCGCAGGTGCTGGGTCTGCTGCTGCTGGACTCGCTGCTGTACGCTCTGGTGGCCTGGTACGTGGAGGCCGTGTTTCCCGGGGAATACGGAGTGCCTCGGCCGTGGTACTTCTTCATCCTGCCCTCGTACTGGTGCAGCAGCCCTCGCGTGGCCCTGCTGAAGGagaaggaggaagaggaggaggccGAGAAGGTGACGAAGGGCGAGTTCATCGAAGAGGAGCCAGCTGGACTGGTCTCGGGGGTCAAGATCAAACATTTGGCAAAGGTGTTCAAAGTGGGAAATAAGACCAAGGAGGCGGTGAGGGATTTGACGCTCAACATGTTCGAAGGCCAGATCACTGTCCTGCTGGGTCACAACGGAGCGGGAAAGACCACCACGCTGTCAATGCTCACAGGCCTCTTCCCGCCCAGCAGCGGCCGTGCGTACATTAACGGTTACGACATATGTCAGGACATGGCTCTGATCCGCCGCAGCCTGGGTCTGTGTCCGCAGCACGACGTGCTCTTCGACAACCTCACCGTCCGGGAACACCTGCTCTTCTACACGCAGCTGAAGGGTTATCCTCGTGAAAAGATCCGCGAAGTGGACCGCATCCTTCGGGTCCTGAATTTGGAGGACAAATGTCATGCGCGATCTAAAACCCTCTCTGGCGGGATGAAGAGGAAGCTTTCCATCGGCATCGCTTTAATCGGAGACTCAAAGGTGGTGATGCTGGACGAGCCCACCTCAGGAATGGACCCCTCGGCCCGCCGGGCCACCTGGGACCTGCTGCAGGGCGAGAAGCGGGGCCGCACCATCCTGCTCACCACACACTTCATGGATGAGGCCGACCTGCTGGGAGATCGGATCGCCATCATGGCCAGCGGAGAGCTGCAGTGCTGCGGCTCGCCGCTCTTCCTCAAGAACAAATACGgtGCTGGTTACCACATGGTTATAGTAAAGGATGCGTTTTGTAACATGTCCGAGATCACCCGTCTAGTGCACATGTACGTGCCCGACGCCACTCTCGAGAGCAGTGCGGGCGCTGAACTCTCCTACATCCTGCCCAAAGAGAGCACCAGCCGGTTTGAGCTGCTGTTTGCTGAGCTGGAGATGAATCGGGACGAGTTGGGCATCGCCAGCTACGGGGCGTCTGTTACCACTATGGAGGAGGTTTTCCTCAGGGTCGGGAAGCTGGTGGACTCCAGTCTGGATATCCAGGCCATCCAGCTTCCGGCTCTGCAGTATCAGCACGAGCGGCGGTCGCATGACTGGACCATGGACGACTCCAGCAGCATCAGCGGCATGACGGACGTGACGGATTTCACCGACAGCGGCACCATGATCTCGGAGGACGGCTCCAACATCAAACTCAACATCGGGGCCCGGCTCTATATGCAGCAGTTCTACGCTATGTTCCTGAAGAGGGCGCTCTACAGCTGGCGCAACTGGAAGGTGATGGTGGCTCAGTTTCTGGTGCCGCTCATCTTCACGGTCTTGGCTCTCGTAGTGGCCCGCACCCTCCCGGGAAGCCAGATCACGCCCATGCTCCGTCTGGCGTTAAAACAGTACGGCCCTACTCGCGTCCCCGTGGCCGTAGACGTCAATGCCGGGCCGCTGGCTGCAGCTCTGGCTGAGATGTACACCGCGCAGCTGCCTTCCCAGAACGCCGTTGGTGCCACTAACATAACAGATTTGTCGGAGTACGTGCTATATAACGCCTTGAGGGAGGGCGGGGCTTTCAATGAGCACTGCGTGGTGGGCGCCACCTTCAGGAGCCGATCCAGGAAGAGCGCAGAGGTCGTCGGCTACTTCAACAACCAGGGCTATCACACCCCCGCCGCCGCTCTCATGCTGGTGGACAACGCTCTCTACAAACTACTAGCTGGACCCGACGCCTCCATCCAGACCGGAAATTACCCCATGCCCCGCAACATGTCTGAGACGGCCCAGAGCCAGCTTTCGGAGGGTCAGACGGGTTTTGCCATCGCCATAAACCTCATGTACGGCATGGCATCATTAGCCAGCACCTTCGCCCTGCTCCTCGTCTCCGAGCGATCGGTCAAGTCCAAACATGTGCAGCAAGTCAGCGGGGTCTACCTCTCCAACTTCTGGTTCTCCGCCCTGCTGTGGGACCTCATCAACTTCCTGTTGCCCTGCCTGCTTATGCTGGTGGTCTTCCGAGTGTTTTCAGTGAAAGCGTTTGTGGCCGAGAATCACCTGGTGGACGTTCTGCTTCTTCTGCTACTGTACGGCTGGGCGGTGATTCCCCTCATGTACCTGCTCAGCTTCCTGTTTTCCACGGCCGCTGCCGCCTACACGCGCCTCACCATCTTCAACATCCTCAGCGGCACGGCCACCTTCCTCGCCGTCACCATCATGACCATACCTGAGCTGAAGCTCGTAGACATGTCTCATCTCCTGGATAAGATCTTCCTGATCTTCCCAAATTACTGCTTGGGCATGTCCTTCAGCGAGTTCTACCAGAACTATGAGACCATCACCTTCTGCACCTCCAGCGCCTTTGCCGAGTTCATTTGCAAGTACTACAACATCACGTATCAAGTGAACTACTTTTCCATGGATGAGCCCGGAGTGGGCCGCTTCCTGGTGGCCATGTCCCTACAAGGTGTGGTCTTCATCGCCCTGCTTTTCCTCATCGAGCTCCGGTGCGTCCACATACTGCTCAACATCTGCAGGAGACGCAAGAAGGCTTTGCTGTTGGCGGAAGAAGCTCTCCAGCCCGAGGACAGAGATGTTgcggaggagaggaagagggtTTTGGAGTGCCAGCCGGTGGTTGAGTCAATGGTGGGCAGCCCGCTTATACTACAGGAGCTCAGCAAGGTATATTCAGGCGGGCAGTCGCTGTTAGCGGTGGACCGTCTGTCTTTGGCTGTTGGGAAGGGCGAGTGCTTTGGTTTACTGGGATTTAACGGAGCAGGGAAGACTACGACGTTCAAAATGCTGACGGGAGATGAAAGCATAACCTCAGGAGATGCCTTCATTGATGGCTACAGCATCCTCCGGGATGTGAAAAAGGTGCAGCAGAGAATTGGTTACTGTCCCCAGTTTGACGCGGTGCTAGATCACATGACAGGGCGGGAAACCCTGAGCATGTACGCCAGACTGAGGGGCATCCCGGAGAAATATGTCACAGCCTGTGTAGAAAACGTCCTGCGTTCGCTGCTGCTCGAACCTCATGCTGACAAACTTGTCCGCAGCTACAGTGGCGGCAATAAGAGGAAGTTGAGTGCAGGCATGGCTCTGATCGGTGGGCCGCCCGTGATCTTCCTAGACGAGCCGTCCACCGGCATGGACCCCGTGGCCAGACGGCTGCTGTGGGACGCCATCACACGCACCAGAGAGTCTGGCAAAGCCATCATCATAACCTCACACAGTATGGAGGAGTGCGAGGCGCTGTGCACGCGGCTGGCTGTGATGGTGAACGGCCAGTTCAAGTGTCTGGGCAGCCCGCAGCACCTCAAGAGCAAGTTTGGGAGCGGATACACGCTGCTGGCCAAGGTCCGCGTGGAGACGGAGTTAGAGGAGAtggaccttcagctcttcaaaGACTTCATTGAAAGCACCTTCCCAGGAAGTTTACTGAAGGATGAACACCAGGGGATGGTCCACTATCACCTGACTGACAAAACTCTCACCTGGGCACAGGTGTTTGGTGTTTTAGAAACGGCCAAAGAGAAGTACAACATCGAGGACTACTGCGTGAGCCAGATCTCGCTGGAGCAGGTGTTCCTCAGCTTCGCTCAGTTCCAGCACTGCGCCGAAGCCTGCAGGAAATGACACGTTCGAGCACTAAAGGGGCGGAGCTCCTCGATCTGACCTTCACCTGAAGAGTAAGAGGTACACCCTGGGCCGACTGACCCTCCGTCAGACCACTGGACATTGCTCAGGTgtctctcttcacacacacacacacgacacgaTCATACATAACGCACACTTCCAATCGCGCGGAGACCGGACCGCTAACCCCAGGACTCCGCCAGTAGGGGGCGTGTGCGCGTTTGAGACGTTCGTCGCGCCATCGGAAACggtttctcaattttttttaatcggtGCGTCACCGCCCCGAAAGGAAAGTACGTTCGCTGCGTCATCTGTAAGCGCGACAGACTCTgcgtcttgtgtgtgtgtgtgtgtgcgcactcGTGTACGATTGCTGTGTTAtttataaaagtctttttttcgTTGGTTTCTCCTGTTTTCTGCTGTGGTCTCAATGCCGACAGTACACGCGCCTCGCCCCTTTTGCTGATAGCATACGCAAATTAAGGCCAGATGTACGGGAAAACGCGACACAAAAGCTGCTTCTTTGGGATTTGCAATGTTGTAGAACATAAAACGTAGCCGAAcatgaatgtaaaaattttaCAGAACACCGCTGTAGGTCGTTTATAGAATTTATACAGTCGATTTGTTCGCATTATCTAGGCATTTATAGCCGTTTCTctagaaatgataaaaattgaTCTTCCAAAACAGGAAATCTTTCAAAGTGGTGCGATTCTTTATGCATGTCATAATAAAAGtcacgtttattttttttcgctgctaaaaaaaaaaaatcccataaaaCATTCCTCAGTTCTTTTTAACGAGACCACAGATGTTTGAATGCTTTGCTTTTCCCCTCCACATATCCagtcttgattttttttaccagcGTGACATTCCTCCTCCAGATCGGGAGGATTTTTTGGGGGGCTTTGTGTAATTCCGCAGATGACCACTAAAGGACGTATAGtgcactttttaatatttttttttttacatttgcatcaAACTGAATGTGTCTAGATACACTAAACCacaagctttttgtttttgttactcTATCCTGCACTACTGATGTGGACCAATTCATGCAACTTCTGGAATCCATAAAAGAGCTCACAGCGGTCGGGGAGGGTTTAAGATCAgcgtgaaatgtatttttttttgcattgaatgTTTTTAAGACCTCGTAATTCATGTCGACGAGGCTCAGTGACTTTTAGCGTTTATGCTAGATTTCCTCTCAATCAGCGAGTCTTTGTTGAACACGGTTCTGCGTCCTTACGAAGATTGAAATGAAAGCAGCATGGCTTCCCCTTCCAGACCGAACCGACATCACTTTGACCACGTTTCCGTCCATGCCGATGCGGACCGAATGTAAAACACACTGACGTACTGTAGATAAACGGGGCTTGACGGTGACGGACAACAAATTGTTTCTTTTCTACGTTTTTTGTCGTTGATTGGTCCGTTTTGCACAGTGCTCTGGCTGTCGTGTCTGAACTGCTTGTTTGAAATACTGCATTTTGAGAATCGAGAAGGCAAACTTTGGGAATGTTAATGACGACGATGTtgatttaaaaggtaaaatgtaTACCATAATGCAAAAAGGGAATTTACATTGTAATCTTGTGTACTGTATCACTAAATTAACCTTGTGAGAAATGTAAGTattgccatttctttttttctttttctttttattaaatctgcCTTGTGCAAAGGAA

Function

GO: NA

KEGG:

id description
K05643 ABCA3; ATP-binding cassette, subfamily A (ABC1), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250532.1 lncRNA downstream 251682 3783737 ~ 3786865 (-) True LOC122342142
TU25026 lncRNA downstream 416678 3621489 ~ 3621869 (-) True G16815
TU24978 lncRNA downstream 511699 3503008 ~ 3526848 (-) True G16779
TU24980 lncRNA downstream 513309 3475325 ~ 3525238 (-) True G16780
TU25171 lncRNA upstream 59395 4137118 ~ 4138203 (-) True G16901
TU25199 lncRNA upstream 156652 4234375 ~ 4277855 (-) True G16926
TU25205 lncRNA upstream 187488 4265211 ~ 4267492 (-) True G16930
TU25204 lncRNA upstream 188980 4266703 ~ 4267492 (-) False G16930
TU25209 lncRNA upstream 237458 4315181 ~ 4315571 (-) True G16933
XM_043234148.1 mRNA downstream 3449 4027890 ~ 4035098 (-) True LOC122340774
XM_043234146.1 mRNA downstream 13908 4021105 ~ 4024639 (-) True LOC122340742
XM_043234145.1 mRNA downstream 18836 4011064 ~ 4019711 (-) False LOC122340716
XM_043234144.1 mRNA downstream 23919 4011064 ~ 4014628 (-) True LOC122340716
XM_043234147.1 mRNA downstream 32060 4002734 ~ 4006487 (-) True LOC122340758
XM_043234135.1 mRNA upstream 1785 4079508 ~ 4095295 (-) True ccnf
XM_043234413.1 mRNA upstream 25516 4103239 ~ 4107748 (-) True LOC122341077
XM_043234379.1 mRNA upstream 36656 4114379 ~ 4121527 (-) True LOC122341056
XM_043234155.1 mRNA upstream 68961 4146684 ~ 4153958 (-) True dnaja3a
XM_043234136.1 mRNA upstream 138128 4215851 ~ 4241696 (-) True vasnb
TU25102 other downstream 51116 3986240 ~ 3987431 (-) False LOC122340684
TU25103 other downstream 52880 3984667 ~ 3985667 (-) False LOC122340684
XR_006250503.1 other downstream 174696 3851352 ~ 3863851 (-) False LOC122341931
XR_006250494.1 other downstream 555098 3473444 ~ 3483449 (-) False LOC122341810
TU24952 other downstream 719483 3315438 ~ 3319064 (-) False LOC122333478
TU25236 other upstream 325374 4403097 ~ 4407697 (-) True G16953
TU25544 other upstream 369657 4447380 ~ 4448881 (-) True G17131
TU25560 other upstream 372592 4450315 ~ 4453135 (-) True G17133
XR_006250404.1 other upstream 526027 4603750 ~ 4605565 (-) False LOC122341034
TU25607 other upstream 600861 4678584 ~ 4679783 (-) True G17167

Expression Profile