RNA id: XM_043234221.1


Basic Information

Item Value
RNA id XM_043234221.1
length 1611
RNA type mRNA
GC content 0.40
exon number 10
gene id LOC122340945
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4573347 ~ 4588316 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTGTAGTCACTTAAGATGGTCATGATAAGAGcaagtaaaactaaaacaggAATGATCTCCGCACGATCTCTCATATCATCTTATTTATTCACTCTCTTAAAGTTTCAAGcaTTCCTGTCCTTCAGAGATGaagtttatttgtttgaccTTCTTGATTATTTATGGAATTACAGATTCAAGATCAGAGCAGTATGAAGTAGTGGGATTTGTGGATCCTGTTTTTGCTGTAGCTGGTGAAGATGTGATTCTGCCCTGTTCAGTCAAACCCAGCATCAGTGTTGAGGACATGAGAGTGGAGTGGTTTAGATCTGACCTGAAAGACTCACAACTAGTGCATCTCTATGAGGATCATGAAGACGGCAATGCAGAGCAGATTGAGTCCTACAGAGGGAGAACAGAACTGACTCATCAAGAACTAGAGAGAGGAAACGCATCACTCAGACTCTCATCAGTCCGAGTCTCTGATGAAGGACGTTACAAGTGCTTTATTCAGTCCAAATCCTGGTATGATGACGTTACTGTTGATGTCAGTGTTGAAGcTGTAGGACGTCCTCCGGTGATCACTGTAGATGGGTTTGATGATTCAGGAGGACTTCATCTACAGTGTGACTCTGAAGGCTGGAACCCTGAACCTGTTCTTGAGTGGCTGAACAGAGAAGGAGTCCGTTTGAGTTCAGAAactacagagacacacagaaacacagatggGTTCAGTGTGAGACACACCATCACTGTATATGAGAGAAACAGCAAGATTCACTGCAGGATCAGACTGAGACATCACATGCTGGAGACACAGATTATCACCTCAAATAAAAGGTTTAATCCTGGGAGGACATCGATCATCTtgatttcagctgtttttgtaCTCGTTGTGATTGCTGGAATGCTGATAGCTGCATGTGTTCGTAAAAACAGAGAACTTGGTCAACTAAATAACGAGAACAGGAAAATAGAACGAGAACATGATGACCTACAGAAGGAGAAGAGCAGAATGCAACAAGAATGTGGTCGTCTACAGAACGTGAGAAGCAGAATACAACAAGaaatgaaaacGGGAAAAGAGGACAAGTGATGCTACAGTCAGAAAAAGAAGATGGAAATAAACAGAAGGATTTTTACACGGTAAAGTGCGCTTCACGGTGAGGTGCAGGTGAAGAAGAGTCTGAATCCTAAAGATAAATACTGGACTGTGGGTCTGCATTGGGCTTGAGATTCTTTACCTTTCTTCTCCTAAATGTGTGGAGCCTCAGAGACTGTTTATGGATTATGAGGAGGGTCTGGCTAGAGTCCATGTCTATTGACGGCAATCTTGTTTGGGTCTTGATTTGCTTaaaattttaagattaaatgttgtatctatttttttcacaaactgtaaatatatctgTCAAGATCACTGTTATTTGAGTGCCAAACATCACGACATCTTTCCACTCTAGAGGTAATCTAtcataaacaatgtttttgatgtttgattATGCTTATGCTTAAGTGGTTATGAACtgcattcttttattattttataatgttctcTGATATTCACTTATGTTATAggtacaaataatttttttgtatcataTTAAAAAGTGAACATCATATTTTGGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250411.1 lncRNA downstream 9327 4563249 ~ 4564021 (-) True LOC122341087
XR_006250419.1 lncRNA downstream 15200 4555052 ~ 4558148 (-) True LOC122341092
TU25572 lncRNA downstream 113312 4458698 ~ 4460036 (-) True G17142
TU25573 lncRNA downstream 114213 4458698 ~ 4459135 (-) False G17142
TU25541 lncRNA downstream 129424 4443698 ~ 4443924 (-) True G17129
TU25546 lncRNA upstream 14235 4602551 ~ 4650642 (-) False LOC122341034
TU25555 lncRNA upstream 14235 4602551 ~ 4650642 (-) False LOC122341034
TU25591 lncRNA upstream 21417 4609733 ~ 4612198 (-) True G17154
TU25539 lncRNA upstream 77508 4665824 ~ 4666415 (-) True G17127
TU25650 lncRNA upstream 214145 4802461 ~ 4812447 (-) True G17201
XM_043234290.1 mRNA downstream 5043 4549687 ~ 4568305 (-) True LOC122341001
XM_043234138.1 mRNA downstream 259089 4278495 ~ 4314259 (-) False glis2b
XM_043234137.1 mRNA downstream 285088 4278495 ~ 4288260 (-) True glis2b
XM_043234136.1 mRNA downstream 331652 4215851 ~ 4241696 (-) True vasnb
XM_043234155.1 mRNA downstream 419390 4146684 ~ 4153958 (-) True dnaja3a
XM_043234343.1 mRNA upstream 14747 4603063 ~ 4605497 (-) True LOC122341034
XM_043232362.1 mRNA upstream 197721 4786037 ~ 4792946 (-) True cactin
XM_043235365.1 mRNA upstream 232776 4821092 ~ 4827401 (-) True blvra
XM_043231430.1 mRNA upstream 242838 4831154 ~ 4842674 (-) True LOC122333724
XM_043235992.1 mRNA upstream 255638 4843954 ~ 4887166 (-) True LOC122342176
TU25560 other downstream 120213 4450315 ~ 4453135 (-) True G17133
TU25544 other downstream 124467 4447380 ~ 4448881 (-) True G17131
TU25236 other downstream 165651 4403097 ~ 4407697 (-) True G16953
TU25102 other downstream 585917 3986240 ~ 3987431 (-) False LOC122340684
TU25103 other downstream 587681 3984667 ~ 3985667 (-) False LOC122340684
XR_006250404.1 other upstream 15434 4603750 ~ 4605565 (-) False LOC122341034
TU25607 other upstream 90268 4678584 ~ 4679783 (-) True G17167
TU25669 other upstream 255764 4844080 ~ 4848917 (-) False LOC122342176
TU25683 other upstream 277047 4865363 ~ 4882329 (-) False LOC122342176
XR_006248739.1 other upstream 758235 5346551 ~ 5378221 (-) True plppr2a

Expression Profile