RNA id: XM_043232362.1


Basic Information

Item Value
RNA id XM_043232362.1
length 2935
RNA type mRNA
GC content 0.53
exon number 10
gene id cactin
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4786037 ~ 4792946 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acaaACCCTTTTGTTTAATCTAAATGATTATCACACAGTTGATTTGAGTAGCATCATTATTACAAACGCTGTAAACAAGGTTACCTATTTACGCGACGCGGCGCAGTCAGGACCTGAAAACATGGGATCGAAGAAGCATCGTAGGAGCCGATCGCGGTCCCGCTCTCCAGAAAGATCCCGTAGGTATGTCCGCTCGCGCTCGCCGGAGGACAGACACGGTCGAAACCGATCTCCCGTGAAAGGTTCTCGCAGACGAGGTCGGTCTGACAGCGGCGGCTCCAGGAGCAGCGGAGGATCCGCAGGCCCTAGTCGATACCGAGGGAGAGAGTCCGGTCACTCCAGCGACTCCGACCGCGAACACAGAGACAGAAGAGCACACCGAAGATCGAAGGACAGAGACAGCTCTTCAGGTGATAACCACACTAATCAGAAGAAATATAAGACGAAGACCAAACACAAGGATGAAAAGGGCAGCAGGAGGAGGAGTAGAAGCTCCTCACGTTCCAGCTCAGAGTCCAGTGTGGAGAGAAACCGAGGCAGAGATGACAGGAGACGACAGAGCAGGAGCTCCAgccgagagagacagagagagaaagaccgAGAGGGGAGGAGGAGACCGAGCAGAGAGAGGGATCGAGACAGACGTAGACGTTCTGAATCCAGATCTTCCATTTCCTCGAGCTCCTCCACCGACTCTGAACAGGAAGGCAAGACGACTCAGGGGTCCTCCTCCAATAGAGAAGACCAGAAGAAACAGAAGGAGATGATGAAAGCGCTGGAGACCCCGGAGGAGAAGAGAGCCAGACGTCTGGCCAAGAAAGAGGCCaaggagaggaagaagagggAGAAGATGGGCTGGAGTGAAGAGTACATGGGCTATACCAATGCTGATAACCCCTTTGGAGATAACAACCTGCTGGGCACCTTCAAATGGCAGAAGGCTCTGGAGAAGAAGGGCATCGGGCACTTGTCAGAAAAAAACCTGAAGGAGAGGAATAAACACATCCAGGTGGAAAACCGCAGGGAGTTGCAGAAggtgaaGCAGCTGCGTCTGGAGCGAGAGCGGGAGAAGTCCATGCGTGAGCAGGAGCTGGAGAtgctgcagagagagaaagaggccgAACACTTCAAAACATGGGCGGAACAGGAGGACAACTTTCACCTGCACCAGGCCAAACTGAGGTCTAAGATCCGGATCCGTGACGGCCGGGCGAAGCCCATCGACCTGCTGGCTAAATACATCAGCGCTGAAGACGATGATCTGTCGGTGGAGATGCACGAACCGTACACCTTCCTCAACGGACTCACCGTCACAGACATGGACGACCTGCTGGAGGACATCAAGGTGTACATGGAGCTGGAACAGGGCAAAAATGTGGATTTCTGGAGAGATATGACCACCATTACTGAAGACGAAATCAGCAAACTGCGCAAACTAGAGGCGTCAGGCAAAGGACCAGGAGACCGTCGTGAGGGGATAAACACATCTGTCAGTACAGACGTGCAGAGCGTGTTTAAAGGGAAGACGTACAGTCAACTTCAGGCTCTTTACATGAACATTGAGAACAAGATCCAGGCCGGAGGCTCCAACCTGGACATCGGTTACTGGGAGAGTCTCCTGCAGCAGGTGCGGGTCTACATGGCACGGGCCAGgcTGAGAGAGCGCCATCAGGACGTCCTGCGGCAGAAACTGTTTAAACTTAAACAGGAACAGGGTGTGGAGAGCGAACCGCTTTTCCCCATCATCAAAGAAGAGCCGGAGAACGAGCGGCCCATTAGCCCTGCAGCGGCGGAGTCTGCGGATGAGGAGCCGAGCAGCTCCCAGCAAGGTGACGATAGAGTCGGACGGACCAAGAGGCTGGATAGAGACGAGGGTGAGCGTTCTGGAAGGAGCAGTCCTGAGGAGAAGAAGgaaggggaggaggaggagggagagaaagatGAAGCACCGGAAGCAGTGTTAACAGAGGAGGATTTGATCCAGCAGAGTCAGGCGGAGTACGACTCCGGCCGTTACAGTCCCACCCTCCTGCAGCCCCCGGAGTTACCTCTGGACACACACATCATCAACGTGGAGGAGGACCTGCAGAGACTCCAGCTGGCCCGGAGACAGCTGCAGGTGACCGGTGACGCGAATGAAAGCGCTGAAGATGCATTCGTGCGTCGCGCTAAAGAGGGCATGGGCGGCGACGAGGCTCAGTTCAGCGTTGAAATGCCTTTGACTGGAAAAATGTACTTGTGGGCCGACAAATACCGTCCACGTAAGCCTCGCTTCTTCAACCGCGTCCACACCGGCTTCGAGTGGAACAAGTACAACCAGACGCATTACGACTCCGACAACCCGCCGCCCAAGATCGTCCAGGGCTACAAGTTCAACATCTTCTACCCCGATCTCATCGACAAGCGCTCGACGCCGCAGTACTTCCTCGAGCCCTGTCCCGACAACAAAGACTTCGGGATACTGCGCTTCCACGCCGGACCGCCGTACGAAGACATCGCATTTAAAATCGTGAACCGTGAATGGGAATATTCCCATCGCCACGGCTTCCGCTGCCAGTTCGCCAACGGAATCTTTCAGCTGTGGTTCCACTTTAAGCGATACCGGTATAGGCGATGAAGAGGAGGACGTCGAGTTGTATTAGCAACGGTGTTAGCGTTGATTATCGGGAACACTGAACGTTCAAAAGCTGTAAAATTGGTGTAAGTCTAGAACAAAGGAGTACAGTCTTTGCTTATTGATACCATTCCGTTAGTGGAAGAACACGTTTTCAACGGAATTGACCTAAATATGTGATAATGTTCCTGTTGAGAATcctgttttgtatattttctgatTTGCAGGCACCTGGCTTGCATTCAATTcgtgtttgttttgaaaatgctaTTCTTgtactattgtttttttgggATGACATTAAAGAttaactcattttta

Function

GO:

id name namespace
GO:0003407 neural retina development biological_process

KEGG:

id description
K25058 CACTIN; cactin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25539 lncRNA downstream 119622 4665824 ~ 4666415 (-) True G17127
TU25546 lncRNA downstream 135395 4602551 ~ 4650642 (-) False LOC122341034
TU25555 lncRNA downstream 135395 4602551 ~ 4650642 (-) False LOC122341034
TU25591 lncRNA downstream 173839 4609733 ~ 4612198 (-) True G17154
XR_006250411.1 lncRNA downstream 222016 4563249 ~ 4564021 (-) True LOC122341087
TU25650 lncRNA upstream 9515 4802461 ~ 4812447 (-) True G17201
TU25696 lncRNA upstream 109748 4902694 ~ 4907908 (-) True G17223
TU25737 lncRNA upstream 194556 4987502 ~ 4991390 (-) True G17245
TU25690 lncRNA upstream 474681 5267627 ~ 5267828 (-) True G17219
TU25761 lncRNA upstream 518436 5311382 ~ 5312742 (-) True G17263
XM_043234343.1 mRNA downstream 180540 4603063 ~ 4605497 (-) True LOC122341034
XM_043234213.1 mRNA downstream 197721 4573347 ~ 4588316 (-) True LOC122340945
XM_043234221.1 mRNA downstream 197721 4573348 ~ 4588316 (-) False LOC122340945
XM_043234206.1 mRNA downstream 197721 4573570 ~ 4588316 (-) False LOC122340945
XM_043234226.1 mRNA downstream 197995 4573350 ~ 4588042 (-) False LOC122340945
XM_043235365.1 mRNA upstream 28146 4821092 ~ 4827401 (-) True blvra
XM_043231430.1 mRNA upstream 38208 4831154 ~ 4842674 (-) True LOC122333724
XM_043235992.1 mRNA upstream 51008 4843954 ~ 4887166 (-) True LOC122342176
XM_043235904.1 mRNA upstream 144474 4937420 ~ 4940603 (-) True LOC122342113
XM_043231526.1 mRNA upstream 151180 4944126 ~ 4952964 (-) True LOC122333749
TU25607 other downstream 106254 4678584 ~ 4679783 (-) True G17167
XR_006250404.1 other downstream 180472 4603750 ~ 4605565 (-) False LOC122341034
TU25560 other downstream 332902 4450315 ~ 4453135 (-) True G17133
TU25544 other downstream 337156 4447380 ~ 4448881 (-) True G17131
TU25236 other downstream 378340 4403097 ~ 4407697 (-) True G16953
TU25669 other upstream 51134 4844080 ~ 4848917 (-) False LOC122342176
TU25683 other upstream 72417 4865363 ~ 4882329 (-) False LOC122342176
XR_006248739.1 other upstream 553605 5346551 ~ 5378221 (-) True plppr2a
TU25919 other upstream 938426 5731372 ~ 5734483 (-) True G17357
TU26077 other upstream 1139948 5932894 ~ 6084545 (-) True G17457

Expression Profile