RNA id: XM_043231430.1


Basic Information

Item Value
RNA id XM_043231430.1
length 4796
RNA type mRNA
GC content 0.44
exon number 16
gene id LOC122333724
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4831154 ~ 4842674 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attgatgtttttatcttttcagaGTTGAGGAGAGACACTCCATGTTCTCCAGGTCACTGTCAGAAGATCACATTACTGCTGCAGAGTCCCGCGGTCAAATTCATCACTCACCCAGAGTTCTTCACCGTTCTCCACGCAAACTATgggGCATATCGTATGTTCACCAACAGCTCGTGTCTGAAACACATGGTCCTAAAGATCAGGCGTGATGCCCGAAACTTTGAGCGTTACCAGCACAACCGTGACCTGGTGACCTTCTTGAACAGGTTTGCTGATGCTCAGTTGGAGCTGCCTCGTGGCTGGGAGATCAAAACAGACCCGCAGGGAAAGTCTTTCTTTGTAGACCACAACAGTCGTGCCACAACCTTCATTGATCCCAGGATCCCCCTGCAAAACGGCAGATTGCCCAACCACCTGACGCACCGCCAGCACCTGCAGAGATTACGCAGCTACAGCGCAGGAGAGgCATCTGAGGTGTCACGCACCAGAGGGGTGTCCTTGTTAGCCAGGCCTGGAAACAGCCTGGTAGCAGCCATACGAAACCAAAGCCAGCAGGAGCCAGTGCCATTAGCATACAATGATAAGATTGTAGCGTTTTTACGGCAACCAAACATCTTTGAGGTGCTACAGGAACGGCAGCCGAGCCTGGCGAGGAATCACTCGCTCAAGGAAAAGGTGCATCACATCCGAACTGAAGGCACACAGAGACTGGAGAAGCTGTGTTGTGATGCTGACCTGGTCATGCTATTAAGtttgtttgaaGAGGACATCATGTCTTACGTTCCGCTCACATCATTTCACCCCGGGTTCAACTTCTCTCCGCGTTGCTCTCCTGGCTCCTCACCTCAAAACTCTCCAGGGACCCAGAGGGCTCGGGCACCAGCTCCCTACCGCAGAGATTTTGAAGCCAAACTGCGCAACTTCTACAGGAAGCTGGAGGCAAAGGGCTACGGGCAAGGACCCGGCAAGATCAAATTGATCGTCAGAAGAGATCATCTGTTAGAAGGAACATTTAACCAGGTCATGGCCTACTCCCGTAAAGAGCTCCAGAGAAACAAGCTCTACATCACCTTTGTTGGAGAGGAAGGACTAGACTACAGCGGACCGTCGCGAGAGTTTTTCTTCCTGCTGTCTCAGGAGCTGTTTAACCCTTACTATGGCCTGTTTGAATACTCCGCTAACGACACATACACCGTCCAGATCAGCCCCATGTCTGCTTTTGTAGAAAACCATTTGGAATGGTTTCGCTTCAGCGGTCGAATTCTTGGGCTGGCTTTGATTCATCAGTATTTGTTGGACGCCTTCTTCACCCGCCCGTTTTATAAAGCTCTCCTCAGACTAGCCACGGATCTCAGTGATCTGGAGTACCTGGATGAGGAGTTTCATCAGAGCTTACAGTGGATGAAGGACAATGACATCACCGATGTGCTGGATCTCACCTTCACTGTCAATGAGGAAGTGTTCGGACAGGTGACCGAGCGGGAGCTGAAGTCTGGCGGGACAAATGTGCAGGTGACCGAGAAGAATAAGAAGGAATATATCGAGCGGATGGTGAAATGGAGGGTGGAGCGTGGTGTCGTCCAGCAGACACAGGCTCTCGTCCGGGGCTTTTATGAAgTGGTGGACTCCCGTCTGGTGTCTGTGTTTGATGCCAGAGAGCTGGAGCTGGTCATCGCAGGAACAGCAGAGATAGATTTAAATGACTGGAGAAACAACACGGAGTACAGAGGAGGTTATCATGATGGGCATATTGTGATCCGGTGGTTCTGGGGTGCGGTGGAGCGCTTTAATAATGAACAGAGACTGCGTCTGCTGCAGTTTGTGACGGGCACCTCCAGCGTGCCGTACGAGGGCTTCACCGCGCTGCGCGGCAGCAACGGCCTGCGACGCTTCTGCATCGAGAAATGGGGCAAGATCACATCGCTCCCGAGGGCGCACACATGCTTTAATCGTCTGGATCTTCCGCCGTATCCATCCTACACCATGTTGTACGAGAAACTGCTGATCGCAGTGGAAGAGACCAGCACTTTTGGCCTTGAGTGAGGACTCGACGCATAAAACACCTTGCTCCCGGTGACTTTTCTGTGTACACCGTATGTAATTATCTACTAGCGTGGATCGTGTCCTGTGTCCGTCTCTTTGGTTTGTTCAGGACACCACTGCATGCATCAGTCACCTGCGCGGGTGGACAGTGTGTAACGGGTATGCAATAGCGAAAGAGAAGCCTTCAACCTGCTTTAACACTCAGGGCCTCGACCTCCGCTGGAGTCGCTCTCAGTTCACACATCATTTCACCCCAAACCGTCACGGCCAGCATCCTTTCTGTTGGTGCATTTTCACATTGACAAGAATTGTAAAGTACAaaccaaatatgaaaatatttgattgaGTTGCCGTAATTACTGTAAATGTGTGCGCTAGTTCACATGATCTCACCAAACACGGCATCATCACGGGAAGCGGAGTCACTCCGCGGGAGTCAAAGCGGGAAAATGGCAAGCCTGAGCCTTGATTTGacacttttgatttattcattttgtactgatctgtgcatttaaatattaaaatcattaaggCGTCAGACATGTTTAAGGACGTTTAAGGCTCCGTGCTGTCTTGTCTGTAATGTTTCAATGAACTTTCAGTGAATTGATGTTTTCGGGTATAAAACCCAACACTAAAAGCCAAACACAACAAATCCAatcagaatatatttaatgcttATTATACAGCTGCGTGGAGAGGGATTTTAGGGATTGCGCTGTTCAGAGCCGTCCAGCGTAACAAAACACTAAAACGAAGGACTGAAGAAAATGTGTTGTTCTTTGCTTCTAGATGAGACACTGTGTGAAGGTGCGTTTGTGGATTTATAGTGATTTGAGCCAACAGGTGATGTGGATGTACTTTATGTAAATGAGCAATTTTGTGTGATTCTTTACACATTACTgcactttgtatttttaatattaaagtgcccctattatgggttatgaaaggttcatattttggttttgtgagtCCCAAACAAAAGGTTGTCATGCATGcgattttcttttcatttctttttaccttatttgtatAGCTTCATTCAGCTTTTAACGCCCCAAAAGCGACACCTAGCGACAAgcaatgaatttgcattttttttattcagaccaaagCTAATGCCGTTTCATTTTGACGTCGACagaaaataactttatacacggtgcactttcagatttacaactttgcaggatgttttcattcacctaGAGCTTTATTAGACAGTTGCATGAAAGgtcataatagaggcactttaaaatggaacgatatttagtttttatttattcagtttttatgtatttatttcaatttccaGATTTAGATCGTTGGTGTTACTGTCTGTGCTCCTATTGGCGGTTGCCATGTCACATTTgttgctcatttgcataaatgtaaaatgtttgtcTAAACTTTGTTGCATCACCATCTATCACTGTCACTTAAAATATCCCGATGCCATAACATGCACTCGCTTTCTCTGAcgtttatgaaatatttttgcttttctatttATATGAAGTCTTTTTATGACTTAAATTGGTGGGGTTATTGAAAGATATGACAgaccaaataataaaaattgtgcaCCACATGTCATGTTCTTCAGAGCGTTTCAGCTGTTTGTGAATTTGAAGAGAAGtgagtcatttatttattcacaaagGAAATTGGTTTAAATGTCAGGACACATCTCTTTGAAATGTCAAAGTTGTTCGTTCTGTGGTTGGTTTTATTGACGACTAGATTTGATTACTGTGCTGAAGTTTTGATTATTgttcatgtttacattttaagatgatgtgaatgtgtgtattataCATTAAGATGGTCATAAATTGTCTTAACATGATGCCATTCAAAGGTGCATGTGTTTCTGTCTAATCCACACTTGATGAATCAGTCTTTTACTAATGTCTcctaatattttctaaatgggaacgttcacccaaaaaacagcattgtttGAATATGCAGAAGAATGAGAAAGTCGTACagattaaattatgttttccagaagttttcatttttgggtgaactgtccttttTAACGTGGTGGTGACGGAGAACAAGCTTTTGACCGTGTCTGAAATGTACTTCTGCTAAAAACGATTGCAATGAACAGCACTCGGCTTAAGATATTAGGAATGTAGAAAgtgaatttgtattatttatccCAATTAAGAAGTTATAAAAAATGTCTGTATATCACACGTGTACATACTTGCTTGAACAGTCAATgcaaaatctaaattttaaaatgtgatgaatCAAATCAGCAGCCAAcagttcatctttttttttaaaaaaaacatgtcttcaTACTTGCTATTTGCATAATGTTAAGTTTTCTCAAATGTATATTACTATGCATATTTGGTTGGAATTGTAAGAAATGCTACTCTTTGGCGCTTGTGGAGGACGTTTCTTCATTTATCGAGACGCTCGCAGCCATTTGACCGCGTtgagagaaaagaggagaagGTTCTGGAACATACTGCCTCTCTATAAACACGGCATTCTGGGAAATGCAGAAGGATTTGGCTCCTGCTTTCACCTCGGACACATACACTCGCCTGCTTATGTCCTTTTTACACTTTAATCTATGTGTGTGGGAGAGAATAAGAGCGGGAAATGtacaaatgttttgaattgCGTATTGAGGTCACTTATAGCGCCTCTCTCAGGCTGAGCTCTGTAACTACAGCATAACACTGTTAACGAATGTCAATAAACAATCACTTTCTAATGCA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25650 lncRNA downstream 18707 4802461 ~ 4812447 (-) True G17201
TU25539 lncRNA downstream 164739 4665824 ~ 4666415 (-) True G17127
TU25546 lncRNA downstream 180512 4602551 ~ 4650642 (-) False LOC122341034
TU25555 lncRNA downstream 180512 4602551 ~ 4650642 (-) False LOC122341034
TU25591 lncRNA downstream 218956 4609733 ~ 4612198 (-) True G17154
TU25696 lncRNA upstream 60020 4902694 ~ 4907908 (-) True G17223
TU25737 lncRNA upstream 144828 4987502 ~ 4991390 (-) True G17245
TU25690 lncRNA upstream 424953 5267627 ~ 5267828 (-) True G17219
TU25761 lncRNA upstream 468708 5311382 ~ 5312742 (-) True G17263
TU25792 lncRNA upstream 564283 5406957 ~ 5407435 (-) True G17272
XM_043235365.1 mRNA downstream 3753 4821092 ~ 4827401 (-) True blvra
XM_043232362.1 mRNA downstream 38208 4786037 ~ 4792946 (-) True cactin
XM_043234343.1 mRNA downstream 225657 4603063 ~ 4605497 (-) True LOC122341034
XM_043234221.1 mRNA downstream 242838 4573348 ~ 4588316 (-) False LOC122340945
XM_043235992.1 mRNA upstream 1280 4843954 ~ 4887166 (-) True LOC122342176
XM_043235904.1 mRNA upstream 94746 4937420 ~ 4940603 (-) True LOC122342113
XM_043231526.1 mRNA upstream 101452 4944126 ~ 4952964 (-) True LOC122333749
XM_043235377.1 mRNA upstream 149217 4991891 ~ 5219560 (-) False nfixb
XM_043235371.1 mRNA upstream 149217 4991891 ~ 5219560 (-) False nfixb
TU25607 other downstream 151371 4678584 ~ 4679783 (-) True G17167
XR_006250404.1 other downstream 225589 4603750 ~ 4605565 (-) False LOC122341034
TU25560 other downstream 378019 4450315 ~ 4453135 (-) True G17133
TU25544 other downstream 382273 4447380 ~ 4448881 (-) True G17131
TU25236 other downstream 423457 4403097 ~ 4407697 (-) True G16953
TU25669 other upstream 1406 4844080 ~ 4848917 (-) False LOC122342176
TU25683 other upstream 22689 4865363 ~ 4882329 (-) False LOC122342176
XR_006248739.1 other upstream 503877 5346551 ~ 5378221 (-) True plppr2a
TU25919 other upstream 888698 5731372 ~ 5734483 (-) True G17357
TU26077 other upstream 1090220 5932894 ~ 6084545 (-) True G17457

Expression Profile