RNA id: TU25539


Basic Information

Item Value
RNA id TU25539
length 493
lncRNA type inter_gene
GC content 0.63
exon number 2
gene id G17127
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4665824 ~ 4666415 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGTATAGGACAAATCTAAatacttcatatatttttacagtatgtgcctgcaattttttttaaatttagctaCTGACTGATGTTTACTGAAAGATACCTTTGCTACACAATTATTTTCAATGCGAGAAGCAGTGAATGAGAATGTATGCACACGAGGTTAACCTTGATGTTGGTGACTCTCTGTCCGAGTGCGTTCCTCATCCAGGCCATGAGATCTTCCGCCTGCTGATCTGTCAGACGCTCTGAAGCTGCGCAACACAATCCCGTCACCAGCGACTCGAGCTGATATCACGACTTTCTAGGGACGTCCCAGATAATGACCGTGACCGTACCTCCCCTACGCCCCGTCTTACCTGGTTTGCTGTCTTGAAATTTCTCCTCTTTGTAGTGATCTACAACGATGTCGGTCTCGGCTGAGATGAGCTTCTTCCTGTCGAACTCTCTGAGGTGAAGCAGCGTGAGCTCGTCAAACTGCTCGAAGCAGAACAAGAC

Function

GO:

id name namespace
GO:0031503 protein-containing complex localization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25546 lncRNA downstream 15182 4602551 ~ 4650642 (-) False LOC122341034
TU25555 lncRNA downstream 15182 4602551 ~ 4650642 (-) False LOC122341034
TU25591 lncRNA downstream 53626 4609733 ~ 4612198 (-) True G17154
XR_006250411.1 lncRNA downstream 101803 4563249 ~ 4564021 (-) True LOC122341087
XR_006250419.1 lncRNA downstream 107676 4555052 ~ 4558148 (-) True LOC122341092
TU25650 lncRNA upstream 136046 4802461 ~ 4812447 (-) True G17201
TU25696 lncRNA upstream 236279 4902694 ~ 4907908 (-) True G17223
TU25737 lncRNA upstream 321087 4987502 ~ 4991390 (-) True G17245
TU25690 lncRNA upstream 601212 5267627 ~ 5267828 (-) True G17219
TU25761 lncRNA upstream 644967 5311382 ~ 5312742 (-) True G17263
XM_043234343.1 mRNA downstream 60327 4603063 ~ 4605497 (-) True LOC122341034
XM_043234213.1 mRNA downstream 77508 4573347 ~ 4588316 (-) True LOC122340945
XM_043232362.1 mRNA upstream 119622 4786037 ~ 4792946 (-) True cactin
XM_043235365.1 mRNA upstream 154677 4821092 ~ 4827401 (-) True blvra
XM_043231430.1 mRNA upstream 164739 4831154 ~ 4842674 (-) True LOC122333724
XM_043235992.1 mRNA upstream 177539 4843954 ~ 4887166 (-) True LOC122342176
XM_043235904.1 mRNA upstream 271005 4937420 ~ 4940603 (-) True LOC122342113
XR_006250404.1 other downstream 60259 4603750 ~ 4605565 (-) False LOC122341034
TU25560 other downstream 212689 4450315 ~ 4453135 (-) True G17133
TU25544 other downstream 216943 4447380 ~ 4448881 (-) True G17131
TU25236 other downstream 258127 4403097 ~ 4407697 (-) True G16953
TU25102 other downstream 678393 3986240 ~ 3987431 (-) False LOC122340684
TU25607 other upstream 12169 4678584 ~ 4679783 (-) True G17167
TU25669 other upstream 177665 4844080 ~ 4848917 (-) False LOC122342176
TU25683 other upstream 198948 4865363 ~ 4882329 (-) False LOC122342176
XR_006248739.1 other upstream 680136 5346551 ~ 5378221 (-) True plppr2a
TU25919 other upstream 1064957 5731372 ~ 5734483 (-) True G17357

Expression Profile