RNA id: XM_043234343.1


Basic Information

Item Value
RNA id XM_043234343.1
length 1613
RNA type mRNA
GC content 0.34
exon number 3
gene id LOC122341034
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4602551 ~ 4650642 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTgtctttattatgttattaattcATTCTTCATGTAAAGTCTGTCTTCAgcagtaaaatacagtatacagtgaTAACTGTTGGCTATTCATGTATTTTGTGTAGATCTTCTAGTAAATGGTcgtataatgtatatttatgcagGTCTGTCATGATTGTAAAAAGACAACAGCTGGATATTATGCCACAAtcaatattgtttaataaataataacagaacacACTAAACGTACCTGACTAGTCAGCTAAACCAGCTTCTAGAGAAAATTCAGacaaaaacatgagaaaagaacaaatcatattaaaatagtatataatttTCTGACAAACCAGTTCTGATCATTCAGTGTTGTTAACGTCACACAAGTGTTCATCAGGGACAATGAACCTGAACATCTTCAACCTTTACAACATCTGAAGATAATTAGAATTAAATGTGAATCTTTAATATGAtcttattcaaatataaattcattactttaatattatttagtcaAACAAAGAATGAATACTGTTTATTCATATAACTGATTTGTGGctcgcttaaataaaaataaatgaaaagtataCAGGCCGAACATATAAAAGAGTCACAACACCCGATATGAATTTGAGACACCtccatttattaaacaattttcaaaataataagaaacaatTCACAGGACttataaatgaaacatgaaGAATAACAAATCGCGGGTAGGAACACTAAGGAAGCAAGCCCCTGACTACCCCTATTCTCGGATtgcagctcttacctgtctgccgacaaacaaaaccagaatgGCTCTCAAATATTCAAGAACatataaggTGAATGTGATTCTGGATGCTGATACGGCTCATCCACGTCTCACTGTGTCTGATGATGGGAAACAAGTGAAAGATGGAAGGAATCGAATAAAAGTAGTAAATGGAGGAAAAGACAGATTTGATCAAAATCTCGGTGTTCTTGGGAAGGATGGATTCTCCTCGGGGTGTTTCTACTTTGAGGTGCAGGTGAAGGAACAAACTGAGTGGGATTTAGGAGTGACCAGAGAATCTGTGGACAAGAGCACAATGTATATGAGTCCTGATGATGGATACTGGATCGTGGGACGGAGAAATGAGAAATATCAAGCTTGTGATTCTTCTGATTACTCTATTTCTCTGAGTGTAAAGCCCCAGAGGGTCGGTGTTTTTGTGGATTATGAGAAGGGTCTCGTCTTTTTTTATGATGTGGAGTCCAGCTCTTATATCTACTCTTACACTAATCAGTCTTTTAATGAGAAACTCTAtccatttgtttgtttggggtATCAGTGGAATGAAAACGCCACACCACTGATCATCTGTGAAGATTATTAAGGAGATCAGTGAATGATCAACTAAAGTAAAAGTGTAACAGCAATAACTAGATCTGCAGTTAGCTTGAGAAAGACAGGACagaaagtttttaatgttttataaacagCTTACAGGTTGTGAAAGTTTgattgtttttcagtttaaaataggTTTACAGTCTATAAAGAAATAGATGCAGAAGAAGTAAtgttttctattaatttgatttcatattGATTTTGTACTTCAttgaatgtttgtgtatttctaATCCTGTTTTAATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250411.1 lncRNA downstream 39042 4563249 ~ 4564021 (-) True LOC122341087
XR_006250419.1 lncRNA downstream 44915 4555052 ~ 4558148 (-) True LOC122341092
TU25572 lncRNA downstream 143027 4458698 ~ 4460036 (-) True G17142
TU25573 lncRNA downstream 143928 4458698 ~ 4459135 (-) False G17142
TU25541 lncRNA downstream 159139 4443698 ~ 4443924 (-) True G17129
TU25591 lncRNA upstream 4236 4609733 ~ 4612198 (-) True G17154
TU25539 lncRNA upstream 60327 4665824 ~ 4666415 (-) True G17127
TU25650 lncRNA upstream 196964 4802461 ~ 4812447 (-) True G17201
TU25696 lncRNA upstream 297197 4902694 ~ 4907908 (-) True G17223
TU25737 lncRNA upstream 382005 4987502 ~ 4991390 (-) True G17245
XM_043234213.1 mRNA downstream 14747 4573347 ~ 4588316 (-) True LOC122340945
XM_043234221.1 mRNA downstream 14747 4573348 ~ 4588316 (-) False LOC122340945
XM_043234206.1 mRNA downstream 14747 4573570 ~ 4588316 (-) False LOC122340945
XM_043234226.1 mRNA downstream 15021 4573350 ~ 4588042 (-) False LOC122340945
XM_043234290.1 mRNA downstream 34758 4549687 ~ 4568305 (-) True LOC122341001
XM_043232362.1 mRNA upstream 180540 4786037 ~ 4792946 (-) True cactin
XM_043235365.1 mRNA upstream 215595 4821092 ~ 4827401 (-) True blvra
XM_043231430.1 mRNA upstream 225657 4831154 ~ 4842674 (-) True LOC122333724
XM_043235992.1 mRNA upstream 238457 4843954 ~ 4887166 (-) True LOC122342176
XM_043235904.1 mRNA upstream 331923 4937420 ~ 4940603 (-) True LOC122342113
TU25560 other downstream 149928 4450315 ~ 4453135 (-) True G17133
TU25544 other downstream 154182 4447380 ~ 4448881 (-) True G17131
TU25236 other downstream 195366 4403097 ~ 4407697 (-) True G16953
TU25102 other downstream 615632 3986240 ~ 3987431 (-) False LOC122340684
TU25103 other downstream 617396 3984667 ~ 3985667 (-) False LOC122340684
TU25607 other upstream 73087 4678584 ~ 4679783 (-) True G17167
TU25669 other upstream 238583 4844080 ~ 4848917 (-) False LOC122342176
TU25683 other upstream 259866 4865363 ~ 4882329 (-) False LOC122342176
XR_006248739.1 other upstream 741054 5346551 ~ 5378221 (-) True plppr2a
TU25919 other upstream 1125875 5731372 ~ 5734483 (-) True G17357

Expression Profile