RNA id: XM_043235377.1


Basic Information

Item Value
RNA id XM_043235377.1
length 6987
RNA type mRNA
GC content 0.44
exon number 13
gene id nfixb
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4991891 ~ 5219560 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGTCGTGGCTGATGGCCACCGAACCGTTTCTGGTGAATGAAGACCCGTCCAGAGGTCCAGGGATACCAGAGTGCTTCGTAGTGTCGGATTCCTACAGGGATGAATTTCATCCCTTCATCGAGGCTTTGCTGCCACACGTCCGCGCGTTCTCCTACACCTGGTTCAACCTTCAGGCCCGCAAACGCAAGTACTTCAAGAAGCACGAGAAGCGCATGACGAAGGACGAGGAGCGCGCCGTCAAAGACGAACTCCTGGGCGAGAAGCCCGAGATCAAGCAGAAGTGGGCGTCCCGTCTGCTCGCCAAGCTCCGCAAAGACATCCGGCCGGAGTTCCGCGAGGACTTCGTGCTCACCATCACGGGGAAGAAGCCTCCGTGCTGCGTGCTGTCCAACCCCGACCAGAAGGGCAAGATCCGCCGCATCGACTGTCTGCGGCAAGCCGACAAAGTCTGGCGCCTGGACCTGGTGATGGTTATCCTGTTCAAGGGAAGCCCGCTGGAGAGCACGGACGGAGAGAGGCTGGTCAAATCACCGCAGTGCTCCAACCACGGCCTCTGCGTGCAGCCGCACCACATCGGAGTGTCCGTCAAAGAACTGGACCTGTATCTGGCCTACTTTGTCCACACGCCAGAATCTGGACAATCGGATAACTCCAACCAACAAGGAGAAGCAGACATCAAGCCTCCGCCCAATGggCACTTGAGTTTCCAGGACTGCTTCGTGACGTCAGGCGTATGGAACGTGGCCGAGCTGGTCCGTGTGTCACAGACACCAGTTGCCACAGCAGCCGGACCCAACTTCTCTCTGGCCGACCTTGACAGTCCAGGATATTACAACATCAACCTGGGTCGCCGCTCTATTACGTCCACACCATCgaccagGACTGAGATGGAGTTGTATGCCAGTCTCCCGCGGAGctCCAACAAGCGTAAATCCATTGATGACAGTGAGATGGAGAGCCCGGTGGACGAGGTCTTCTATTCGGGCCGTTCTCCTGCCCCGGGGGTGTCCCAGCCCAGCGGCTGGCCCAATGATGTTGATGCAGTGCAACACCATTTGGCCAGTATGCAGGAGAGGAAGATAAAACACGAAAGTGATGGCGTGCAGTTTCCTTACCATGGAAGTCCCCGTGCCTCAGCTTCCTCCCTGCACTTCCCCTCACCCTCCATCATCCAGCAGTCCAGCCCGTACTTCACCCATCCCACCATCCGATACCACCACCACCCGGGACAGGACCCGCTCAAGGAGTTTGTGCAGTTTGTGTGCGCCGACGGATCGGGACAGGCTAGTGGTCAGCCGAACGGAAGCGGCCAGAGCAAAATGCCGGGCTCCTTCTTGCTGCCTCCACCCCCCCCTGTGGCGCGTCCAGTGCCCCTCCCAATGCCAGACTCTAAATCCAGCAGCACGCCCCCCGATGGCGGACTCACCTCACCCACATCTCCGTCATACTCCACGCCAGGCTCCACAGCTCCCAACAGGTTTGTCAGCATCGGATCACGGGACAACAACTTTCTGAACATACCCCAGCAGACGCAGTCATGGTTCCTTTGACGAGGTCCTGCCTGCAACCTGTCGACACAATTTGGAagttttatgacaaaaaaaaaaaaaaatcctctttgAAAATCCCCTCCGACCCCAAACGCGCCCTAAAAACGTGAGCAGCATACGATTGGGAAACGTTCGACCCTGTACTTGCCAACCGCCAGACGCCCTTCAAGCCCGCTCCTCCACCTCCGACAAAGACTTTGAGATCACGGCAGGAGGTGAGGGACCGACAGCATCTCGCAAGAACCGTCACCAGACCAACGGCAACAACCCGACGAACACAGACAGAAAACGTTACTAGGAACAAGGAAGTAGTGTACAATGGCTGGGATTATCAACCGTTTCAGTGGTGAGGAttcagacacaaaaaaaaaaaaacgcaagaGTTTGACCAATTAAACCCAtgggttttctttttaaaacacttaagcGTGCTGATGTTCAGCGCACAGGCAACACTAAATAATAAGAGCCCCAGACGTTTCTATTTTACCTGATTAGCATGCAGTAGAAACGTCTCTTTTTTCCCTTTCGCGGTCAATTACTAAACTAACTACGAGCAGCAGAAGTATTGCACTACAGTAATGAGAAGAACACTAGTTTGACGTGCACTATTGAAAATGGGATCGACGGCGGAcattatttgcacattttaaaagcgGAGAAAAACCAACCTGGCACACAAAAAGCTACCCCGGAGACCTGTTCTCGTAATACAGGactgaattttgaaaaattagtCGCCAAGTGCCAACTAGACAGCaccagatttttttattaatactccTATAGGATGAATGAGGCCAACCGACACACACTTAAGGTGCGGTCGCATTCACCGCCTTTGAATTGAATCAAGTGAAGAAAAATCCAGGTCAGACGGACTCAAGAGTGACAGTTTTGTCAAGTTTTTCCAAATCGGTACAAATTTGCTTCTTCTGTTGAAcgcagttgttttaaaaaaggtgaTAGCCAAACAGGTAATGGCACCCATCGGCTcgcattgtatttttgtaagtCGATGGCTGCCATCAGGTTTTTGGTGAATTATCTCTTTAAAATGACTAGCCTGTAAATTTTCACGGATcatttttgcagtatttttttaattttacaaaataatcgTTCATTCTCGGTAACGTAGTGAAGCACAAAACGCCGCTGGTGTTTTCACAGTTCATTGGTCAACACAAATTAGTTTGACAATCTTGAATCTTCCGAAACTCGTATTCGAAATAACAATTTCCCTCGCAAAATTTCGCTAAATGTGACCACACCTTTGCAGCCGCGTGACCGAGTTacgatttttaaatagtttgtaaaataaaaaaatggcattctttttattaatttcaaactAATTTCACTCTTTGTTCGAAAACTAAAGCCATAACTttgttttaaatggtaaaacttttaattagtagcataaaactaatttaataaaaaaaacatttttttttttactagccCAAGCTAGTCGTTCCgttatttatttcatcataGTAGCGAGGCATAATAAAAGTCCCTGAATCATTACGACTAATAAAACCGGCCCGCGAGCCACGCCCACTTCTGCGTTTCGTTTACGTACCTGTTTACACTCCCAGAAGTCTGTGCTCCAAGAACACGTGACCTCGCTGCGGAGCAAAAGAATGTGTGACATATCATAGCCGTGCTCAGAGGGAGGTGGGCGGCTCGGGCCGCTTTTATTAGCATTTCACCGCTCGTTTAATTCGGTGACGTTTCGGCATCGGCTgtccgcacacacacacacacacacacacacacacacgcacgcacgcacgcgctcTCCTCCGCAGATTGACTACAAAGGGAAGCCTTTACAGTAGGGCGATCTTCATCCGCtgataaagttttgtttttcgaCGCAGCTGTAATCGGTAACCTCACAAAATAACTGGACTGCCTGACCATGTATCTCACTGCAGGGAAGCATTGTTGCCGGACGGCGGCCGTGTCATCGCTTTGGTAGAAAACTAACACGAGAATCGTGATGGCAAtggtcttttcttttctaatcAAAGGAAGTGCCTCTGTATTCCCATTATGCAATTTGTTAAACATGAATTCAGGTTATTTTCTTGCATATAAGCTATAGAGGAGCGTGAAATTTttatgagaagaagaaaaaaaaaaaaaaaaagcaagcgtCAGCTCACTAGTTACAAACATCTTTATATATACAggatatatccatatatatttatatatacatttttttttttacttatttgccTAATAAGCTCAGTGGCAGTCTAGTTATTTTTTGAAGTATGGCATGATCACAAATCAGATATCCGTTCAGAAGTACCGGTCCCGAAAAAAACCCAGTTCTGCACTTAATAATtagagcgaaaaaaaaaataataataataatcaactgGCGGAAATCAGATTTCCGCGAAATACGTATCGATAgcgtagttaaaaaaaaaaaaaagaaaaaaaaaaaagaaaatgcacggcttttgatttcttttgtgtttggaCAGGAAGTATttgttattgcaaaataaagtgtgttgATTGAGCCATGTGCAATGCCTTGGGTAGAAACTGTGTTTGTCTCATTGTTAGGGTGTACAGGAAAGCGTAGAGGTGAAATCCTTTTATTATAGTAAAGTCCTCGCCGTCCGGGACTCTAAACTacaggacagacagagagagagagagagaacacgcTCTTTGTAAGTTTTGGGAATTCATTTTGTAATCTTtcctttttctgctttttttttttttttttttttttaaatgttcatttgtaataatttgttCTCAAAACTTAGGAGGGCTGAAGAAGCAGTTTTTTGCGACGCGTCAGAATATATCACTAAATAAAACAGGTGCTTTTTATGGATCAAAGTACACTCGATCTCTATTATACGTAAGAAGACGAAAAATAAGTGTTATCAAGAcaaattttagaagaaaaaaaacgttcagTGCTCTTTCCTTTTTGTATTCACTGAAGGGGGGAGGGGGTTCATCGTGGTCAAGGTTGTGACAAAAGGCATTTTTCCTCCAACCTTTTCTCCGAAGCGATCAAAGAATGTCGGCCGGTGACGTCCTAAGAGGTTTTACGACTTTTATCGAGATAAAATGCGGGATTTTTTTCCGGCGTTTTTGACTTCATGCTATGCATTCCAGTTTTCTAGGACTTCCATGCTTTGGATCGCCCGAACCGCCGTAGTCCTTAACAAGCGTCCCATCTGAAATTCGCTGGCTTTTTGTACATAGAAAATGTTCAATTGGTATGAAAGGTATGACAAGATCTTCCCTGTTTACGGGAGAGGCTTTAATGCAGCTcgaataaactaaaaaaagccCGTGGTGAGCTAAAAATTGGAGTGAGATGGGAGGTGTGACGTGAATTTATCTTTTATAACTTTTAAACTTGCGAATCTCAAAAAAGACGTTTTTCTACAGAGCCCCACACGTGACTCTAGGAATTAAGGATTTTAGTTTCATCGATTTATTCCCTCGCTTTAGTTAAATTGTGgttgcaaattaaaaaacttCACGATAATCAAAGATATTAGTACAAAGTGGCCACAATTGACACAAACAAGGAAACGAGTTAGTACATTTCTACGAATAATTTTGCAAACAGAAGCTGCAACGAAGGAACTATGTGGCTACGATTTACAAAAGTTATGAAACGTATTAGCGCACCGTGTCCGTGATTTATTACAATATGTCAGAACAAATCGGCACAACGTGGTTACGATTTACGAAAAACAAAGACGTTTaagtcataaaaaatgtattttatttttccaaatcaTTTGTGAGGCTctgtatatttcagaaaaatattacaaattttggggtgaaatgcaATTCTTTTCGCGAGCAGATTTCCCCCAAACAAAGTCAGCGACCAATCAGAAAGAGAGTTGAGCTGGAACCCCTCCCCCCGGATCAGCAGCGCCCTCTACTGGCCCCTGTGTAAATGactctaaatatttgttttgtgatcTAGTGTTAGACTCAGAGCATCATAAAGGTTGTCCCTAAAAAGTGCCTTTTGTTCACAGACACCATCTTGTAATCCTGAGTGCCcatctcaaaaaaaagaaaaaaaaaaaaaaaaaacctaaacaaaaaaaaataaatccccTCGTTCAAACTTCTGTATTTCTCCTTCCGCGACTTCTTCAAAGCAGTATATATAGTACTAAAGGAAATCGGTGTGACTTAGTTCctctttttattgttgaataattaagaaaactgtaaaaaacagaaaaatgacaaaaaaaaaaactttctgtcTTGCTTTTCCTTCCTCTGTAATCTTGTCTTCTGCCTCTTTTGGACACTGGAGTAGTCTATAGTTGCATAACCATCACCCTTTTCCCTGTGCCCCTTTTCTCTGAACGGAggggttttaaaataaaaaaaaaatacataaaaagaataaaaaacgaAAAGtacgaaaaaaaaatgttgtctgAGCAGAATGCAGTTAGCTCACATGTTATTCTTGTCTGTACGCTTCACGTTGTATTCATACCGATCTCTTCAGCTTCTCCATTGAACAGTTAATGTACGTGAACAAGTTACGCCGGTGAGCTCTGGTGGGCCGTCCGACAGACGGGCGCCTCGGCTGGACGACCGAGGCCGAGCGCTGGAGGTAGAATAGGCGAGTTTTTGagctatttatttcttttttttgttaccaaATTCGTTTGATTTGCTACGATCTGTCTGTATTGATATTGCATTGAGAATCCGTATCGATGACGCACCTTTTGAATGGTTGTACGTGACcagatatttaatttaaaactaaaaaaaaaaaaaaaaaaaaaaattgagacgAAGCACCTTAAAAACAAAACGGAGCGGTTTCAGCCCAGGGAAAGCGACACAGTCTTTCGAGCCCAGCGTTACGAGCCGAACTCATACCAAAGTGACGCGCggcgccaaaaaaaaaaacccgagCGAAACTGAAATTCTGCGTAAACTCACCAGCAAAAGCCGACAACTCGCTTCCTTCCCTCAAACAAAATATGCAATTGTTTCACTTTCCCGAGTCCGTGAAGCCGGCGTCTGCGCTGGCTGTGATTTTCTTAATATCTGTAATAAGCGAAAGCCATAGCGACGGACACGTGTTTGGCACTCTGGTTGTCCCTCCCTGGTACTGACCgtccattttctttctttcgtaTATTTACTTTTGTACTCTCTTTGTTGAGCGGTGGGCATTCGGATGCGTTTAGAGTAGCGTGAACCCCCGGCGGCTCCGGTCTCGTCCGAACTCCTCGAGCGGCGCCCTTCTCAGTCCACACGCCTTCCAGAGCTCATGGTGAAATGCATGTGTTGATTACAATTTCTTTTCcataataagaaaaacaagTAAGAGCAGCACCTTTAACTGATTGAATAAAAGGATGTTCTTGACTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25737 lncRNA downstream 501 4987502 ~ 4991390 (-) True G17245
TU25576 lncRNA downstream 60054 4477307 ~ 4931837 (-) True G17143
TU25696 lncRNA downstream 83983 4902694 ~ 4907908 (-) True G17223
TU25650 lncRNA downstream 179444 4802461 ~ 4812447 (-) True G17201
TU25539 lncRNA downstream 325476 4665824 ~ 4666415 (-) True G17127
TU25690 lncRNA upstream 48067 5267627 ~ 5267828 (-) True G17219
TU25761 lncRNA upstream 91822 5311382 ~ 5312742 (-) True G17263
TU25792 lncRNA upstream 187397 5406957 ~ 5407435 (-) True G17272
TU25798 lncRNA upstream 189499 5409059 ~ 5468663 (-) True G17274
TU25794 lncRNA upstream 190126 5409686 ~ 5469076 (-) True G17273
XM_043231526.1 mRNA downstream 38927 4944126 ~ 4952964 (-) True LOC122333749
XM_043235904.1 mRNA downstream 51288 4937420 ~ 4940603 (-) True LOC122342113
XM_043235992.1 mRNA downstream 104725 4843954 ~ 4887166 (-) True LOC122342176
XM_043231430.1 mRNA downstream 149217 4831154 ~ 4842674 (-) True LOC122333724
XM_043235365.1 mRNA downstream 164490 4821092 ~ 4827401 (-) True blvra
XM_043235574.1 mRNA upstream 21796 5241356 ~ 5254160 (-) False zgc:158403
XM_043235577.1 mRNA upstream 21796 5241356 ~ 5254159 (-) False zgc:158403
XM_043235576.1 mRNA upstream 21796 5241356 ~ 5254159 (-) False zgc:158403
XM_043235573.1 mRNA upstream 21796 5241356 ~ 5254158 (-) True zgc:158403
XM_043235575.1 mRNA upstream 21796 5241356 ~ 5253858 (-) False zgc:158403
TU25683 other downstream 109562 4865363 ~ 4882329 (-) False LOC122342176
TU25669 other downstream 142974 4844080 ~ 4848917 (-) False LOC122342176
TU25607 other downstream 312108 4678584 ~ 4679783 (-) True G17167
XR_006250404.1 other downstream 386326 4603750 ~ 4605565 (-) False LOC122341034
TU25560 other downstream 538756 4450315 ~ 4453135 (-) True G17133
XR_006248739.1 other upstream 126991 5346551 ~ 5378221 (-) True plppr2a
TU25919 other upstream 511812 5731372 ~ 5734483 (-) True G17357
TU26077 other upstream 713334 5932894 ~ 6084545 (-) True G17457
TU26094 other upstream 734588 5954148 ~ 6105990 (-) False G17468
TU26095 other upstream 883554 6103114 ~ 6105990 (-) False G17468

Expression Profile