Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00021276 |
| length | 902 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 6 |
| gene id | XLOC_010871 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 35408856 ~ 35415077 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051123 | RNA polymerase II preinitiation complex assembly | biological_process |
| GO:0006352 | DNA-templated transcription, initiation | biological_process |
| GO:0000124 | SAGA complex | cellular_component |
| GO:0046695 | SLIK (SAGA-like) complex | cellular_component |
| GO:0005669 | transcription factor TFIID complex | cellular_component |
| GO:0017025 | TBP-class protein binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| ko03022 | Basal transcription factors |
| ko03021 | Transcription machinery |
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-031030-5 | Predicted to enable DNA binding activity and TBP-class protein binding activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF12 (TATA-box binding protein associated factor 12). |
| ensembl_id | ENSDART00000170401 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00022204 | lncRNA | downstream | 489056 | 34915567 ~ 34920233 (-) | False | XLOC_010868 |
| TCONS_00022201 | lncRNA | downstream | 523062 | 34695768 ~ 34886227 (-) | False | XLOC_010867 |
| TCONS_00021282 | lncRNA | upstream | 2803 | 35417807 ~ 35427060 (-) | False | XLOC_010872 |
| TCONS_00022205 | lncRNA | upstream | 244885 | 35659889 ~ 35661552 (-) | True | XLOC_010874 |
| TCONS_00022206 | lncRNA | upstream | 606292 | 36021296 ~ 36021844 (-) | True | XLOC_010877 |
| TCONS_00021816 | lncRNA | upstream | 648435 | 36063439 ~ 36070293 (-) | False | XLOC_010878 |
| TCONS_00021817 | lncRNA | upstream | 648435 | 36063439 ~ 36073252 (-) | False | XLOC_010878 |
| TCONS_00021274 | mRNA | downstream | 14867 | 35386216 ~ 35394422 (-) | True | XLOC_010870 |
| TCONS_00021273 | mRNA | downstream | 16363 | 35385690 ~ 35392926 (-) | False | XLOC_010870 |
| TCONS_00021269 | mRNA | downstream | 79288 | 34916297 ~ 35330001 (-) | False | XLOC_010868 |
| TCONS_00021279 | mRNA | upstream | 571 | 35415575 ~ 35427060 (-) | False | XLOC_010872 |
| TCONS_00021281 | mRNA | upstream | 658 | 35415662 ~ 35532937 (-) | False | XLOC_010872 |
| TCONS_00021284 | mRNA | upstream | 140025 | 35555029 ~ 35579200 (-) | False | XLOC_010873 |
| TCONS_00021285 | mRNA | upstream | 140025 | 35555029 ~ 35585374 (-) | False | XLOC_010873 |
| TCONS_00021286 | mRNA | upstream | 141834 | 35556838 ~ 35586401 (-) | False | XLOC_010873 |
| TCONS_00021271 | other | downstream | 314329 | 35094846 ~ 35094960 (-) | True | XLOC_010869 |
| TCONS_00021264 | other | downstream | 843651 | 34557016 ~ 34565638 (-) | False | XLOC_010866 |
| TCONS_00021263 | other | downstream | 843651 | 34557016 ~ 34565638 (-) | False | XLOC_010866 |
| TCONS_00021262 | other | downstream | 844336 | 34557016 ~ 34564953 (-) | False | XLOC_010866 |
| TCONS_00021280 | other | upstream | 585 | 35415589 ~ 35420909 (-) | False | XLOC_010872 |
| TCONS_00021283 | other | upstream | 5560 | 35420564 ~ 35424000 (-) | True | XLOC_010872 |
| TCONS_00021289 | other | upstream | 406317 | 35821321 ~ 35823946 (-) | False | XLOC_010875 |
| TCONS_00021290 | other | upstream | 406317 | 35821321 ~ 35824079 (-) | False | XLOC_010875 |
| TCONS_00021291 | other | upstream | 406987 | 35821991 ~ 35824708 (-) | True | XLOC_010875 |
