RNA id: TCONS_00021280


Basic Information

Item Value
RNA id TCONS_00021280
length 821
RNA type processed_transcript
GC content 0.47
exon number 9
gene id XLOC_010872
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 35415575 ~ 35532937 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTCAGACTCTTATGCCTCTGTTATTAAAGCACTGGAGCACTCTGCCCTCGCCATCAACTATAAGCTTGAGGTCAAGTACATAGATTCAGCTTATCTGGAGCCAGCAGCATTGCAGGATGAGCCAGTGAAGTATCATGAGGCCTGGCAGAAGCTCTGCAGTGCTGAGTGTGTGCTTGGGCATGCAGCTGGCAGTGTGTGAATTTGCTCGTAATGTACTTGGCTGGGAAGATGCAAATTCCACAGAGTTTGATCCTGAAACAAAACATCCAGTGGTTATTGAAATGCCTGAGCACAATCCAGGGCAGATGGGTGGAACCATGCGGCTGGGAAAAAGACGCACCTTATTCAAAAGCACCCCCAGCATTCTCCGAAAGCTGTATGGAGATGCTGAATACGTGGACGAAAGGCATCGACACCGCTTTGAGGTGAATCCAGAACTGAAGCACCACTTCGAGGATAGAGGTTTTCGATTTGTGGGTCAGGACCTAGAGGGGGAGCGGATGGAGATCATTGAACTTGAAGATCACACgtattttgttggagtgcagtaccATCCAGAATTCACTTCTCGCCCGATCAAACCCTCACCACCGTATTTCGGCCTTCTGCTGGCAGCGTCTGGGAAACTGCAAAACTACCTCCAGAAAGGATGCAGGCTCTCACCTCGAGACGCATACAGTGACCGAAGCGGCACTAGTTCACCAGACTCGGAAATCTCTGAATTCAAATTCCCATCGCTTTCTTAAAAAGGAAAAACCCACCTAATCATAAAAACACATGAATGACGTTTTATGATATGAAtgtatgaatttaaataaa

Function

GO:

id name namespace
GO:0019856 pyrimidine nucleobase biosynthetic process biological_process
GO:0044210 'de novo' CTP biosynthetic process biological_process
GO:0006221 pyrimidine nucleotide biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0006541 glutamine metabolic process biological_process
GO:0030903 notochord development biological_process
GO:0097268 cytoophidium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003883 CTP synthase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0042802 identical protein binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-160 Predicted to enable CTP synthase activity and identical protein binding activity. Acts upstream of or within notochord development. Predicted to be active in cytoophidium and cytoplasm. Is expressed in blood cell and vascular endothelium. Human ortholog(s) of this gene implicated in immunodeficiency 24. Orthologous to several human genes including CTPS1 (CTP synthase 1).

Ensembl:

ensembl_id ENSDART00000169689

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021278 lncRNA downstream 961 35409606 ~ 35414628 (-) True XLOC_010871
TCONS_00022204 lncRNA downstream 495356 34915567 ~ 34920233 (-) False XLOC_010868
TCONS_00022201 lncRNA downstream 529362 34695768 ~ 34886227 (-) False XLOC_010867
TCONS_00022205 lncRNA upstream 238980 35659889 ~ 35661552 (-) True XLOC_010874
TCONS_00022206 lncRNA upstream 600387 36021296 ~ 36021844 (-) True XLOC_010877
TCONS_00021816 lncRNA upstream 642530 36063439 ~ 36070293 (-) False XLOC_010878
TCONS_00021817 lncRNA upstream 642530 36063439 ~ 36073252 (-) False XLOC_010878
TCONS_00021819 lncRNA upstream 977596 36398505 ~ 36424101 (-) False XLOC_010881
TCONS_00021275 mRNA downstream 512 35408856 ~ 35415077 (-) False XLOC_010871
TCONS_00021277 mRNA downstream 528 35409484 ~ 35415061 (-) False XLOC_010871
TCONS_00021276 mRNA downstream 585 35409289 ~ 35415004 (-) False XLOC_010871
TCONS_00021274 mRNA downstream 21167 35386216 ~ 35394422 (-) True XLOC_010870
TCONS_00021273 mRNA downstream 22663 35385690 ~ 35392926 (-) False XLOC_010870
TCONS_00021284 mRNA upstream 134120 35555029 ~ 35579200 (-) False XLOC_010873
TCONS_00021285 mRNA upstream 134120 35555029 ~ 35585374 (-) False XLOC_010873
TCONS_00021286 mRNA upstream 135929 35556838 ~ 35586401 (-) False XLOC_010873
TCONS_00021287 mRNA upstream 151850 35572759 ~ 35586411 (-) False XLOC_010873
TCONS_00021288 mRNA upstream 160309 35581218 ~ 35586401 (-) True XLOC_010873
TCONS_00021271 other downstream 320629 35094846 ~ 35094960 (-) True XLOC_010869
TCONS_00021264 other downstream 849951 34557016 ~ 34565638 (-) False XLOC_010866
TCONS_00021263 other downstream 849951 34557016 ~ 34565638 (-) False XLOC_010866
TCONS_00021262 other downstream 850636 34557016 ~ 34564953 (-) False XLOC_010866
TCONS_00021265 other downstream 850918 34560200 ~ 34564671 (-) True XLOC_010866
TCONS_00021289 other upstream 400412 35821321 ~ 35823946 (-) False XLOC_010875
TCONS_00021290 other upstream 400412 35821321 ~ 35824079 (-) False XLOC_010875
TCONS_00021291 other upstream 401082 35821991 ~ 35824708 (-) True XLOC_010875
TCONS_00021294 other upstream 524475 35945384 ~ 35975157 (-) True XLOC_010876
TCONS_00021301 other upstream 1187132 36608041 ~ 36610636 (-) False XLOC_010885

Expression Profile

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