RNA id: TCONS_00021278


Basic Information

Item Value
RNA id TCONS_00021278
length 714
lncRNA type retained_intron
GC content 0.46
exon number 5
gene id XLOC_010871
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 35408856 ~ 35415077 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCGGTGATGTTTATTTCTATCGAGCTAAAAGTTCTTCACTTCGTTGATATAACTTACTTAAAACAGCCGTTTAATATCCTTAATGTATTTATGCATTGATTAAACTCAGTTGAACTCTTAATATCTTTTTTCTGCAGCTGATTTAAAACTCCCACTAGTTCTGAAGAGGCTTGTGACATTTGACATCTCTTGATTAGCATAGTATGACCCAGTATCCAGCACAGACCAGTCGCTCGAATTTCTACACGGTTGTGAAAGCAGAAGCCTCTTCAACACCGCCGCTGTCCAGCAGCATGGCCAACAGCACGGTCGCTCCGGGGAAACTGCCCGGCACCCCCGGACCAGCAGGCAGACTGAGCCCAGAAGGACCTCAGGTGCTCAGTAAGAAGAAGCTGCAGGACCTTGTTCGAGAAATTGACCCTAATGAGCAACTTGATGAGGATGTGGAAGAAATGCTGTTGCAGATAGCTGATGACTTCATTGAGAGCGTGGTGACTGCTGCATGCCAACTGGCCCGACACAGGAAGTCAAGCACTCTTGAAGTAAAAGACGTCCAGCTACACCTTGAACGACAGTGGAACATGTGGATTCCTGGTTTTGGCTCAGATGAGATCCGACCGTATAAGAAGGCTTGCACCACAGAAGCTCACAAACAGAGAATGGCACTGATCCGCAAAACAACCAAAAAGTAGCAAGATTGGAATCACCAACA

Function

GO:

id name namespace
GO:0051123 RNA polymerase II preinitiation complex assembly biological_process
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0000124 SAGA complex cellular_component
GO:0046695 SLIK (SAGA-like) complex cellular_component
GO:0005669 transcription factor TFIID complex cellular_component
GO:0017025 TBP-class protein binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko03021 Transcription machinery
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-031030-5 Predicted to enable DNA binding activity and TBP-class protein binding activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF12 (TATA-box binding protein associated factor 12).

Ensembl:

ensembl_id ENSDART00000164145

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022204 lncRNA downstream 489373 34915567 ~ 34920233 (-) False XLOC_010868
TCONS_00022200 lncRNA downstream 523369 34661060 ~ 34886237 (-) False XLOC_010867
TCONS_00022201 lncRNA downstream 523379 34695768 ~ 34886227 (-) False XLOC_010867
TCONS_00021266 lncRNA downstream 523379 34875441 ~ 34886227 (-) True XLOC_010867
TCONS_00022203 lncRNA downstream 528614 34712839 ~ 34880992 (-) False XLOC_010867
TCONS_00021282 lncRNA upstream 3179 35417807 ~ 35427060 (-) False XLOC_010872
TCONS_00022205 lncRNA upstream 245261 35659889 ~ 35661552 (-) True XLOC_010874
TCONS_00022206 lncRNA upstream 606668 36021296 ~ 36021844 (-) True XLOC_010877
TCONS_00021816 lncRNA upstream 648811 36063439 ~ 36070293 (-) False XLOC_010878
TCONS_00021817 lncRNA upstream 648811 36063439 ~ 36073252 (-) False XLOC_010878
TCONS_00021274 mRNA downstream 15184 35386216 ~ 35394422 (-) True XLOC_010870
TCONS_00021273 mRNA downstream 16680 35385690 ~ 35392926 (-) False XLOC_010870
TCONS_00021270 mRNA downstream 79605 34916297 ~ 35330001 (-) False XLOC_010868
TCONS_00021269 mRNA downstream 79605 34916297 ~ 35330001 (-) False XLOC_010868
TCONS_00021268 mRNA downstream 79605 34916297 ~ 35330001 (-) False XLOC_010868
TCONS_00021279 mRNA upstream 947 35415575 ~ 35427060 (-) False XLOC_010872
TCONS_00021281 mRNA upstream 1034 35415662 ~ 35532937 (-) False XLOC_010872
TCONS_00021284 mRNA upstream 140401 35555029 ~ 35579200 (-) False XLOC_010873
TCONS_00021285 mRNA upstream 140401 35555029 ~ 35585374 (-) False XLOC_010873
TCONS_00021286 mRNA upstream 142210 35556838 ~ 35586401 (-) False XLOC_010873
TCONS_00021271 other downstream 314646 35094846 ~ 35094960 (-) True XLOC_010869
TCONS_00021264 other downstream 843968 34557016 ~ 34565638 (-) False XLOC_010866
TCONS_00021263 other downstream 843968 34557016 ~ 34565638 (-) False XLOC_010866
TCONS_00021262 other downstream 844653 34557016 ~ 34564953 (-) False XLOC_010866
TCONS_00021265 other downstream 844935 34560200 ~ 34564671 (-) True XLOC_010866
TCONS_00021280 other upstream 961 35415589 ~ 35420909 (-) False XLOC_010872
TCONS_00021283 other upstream 5936 35420564 ~ 35424000 (-) True XLOC_010872
TCONS_00021289 other upstream 406693 35821321 ~ 35823946 (-) False XLOC_010875
TCONS_00021290 other upstream 406693 35821321 ~ 35824079 (-) False XLOC_010875
TCONS_00021291 other upstream 407363 35821991 ~ 35824708 (-) True XLOC_010875

Expression Profile

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