XLOC_010885


Basic Information

Item Value
gene id XLOC_010885
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36578495 ~ 36610636 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022207
TAATTAACTGCAGTAAACTCATTTATACACCCTAGAGAGCGTTATTTACTGctaataaatggaaaaaagtatGTTTCATGTTCCCGGTCCTTCCGGACAAAGAAGGCCGCCATGTAGACAGAGGATAGGGCCTTCTCCTGGTTCTGTGGAAGTAAAATATGACCTGAAAGAAAATATTGGAGCTGGCTGCTACGGCAATGTCTATCGTGGTATCAGAAAAGTGGACGGCAAACAGTTTATCATCAAGTCGACTTTTTCAGAAGTTGACAGCAATGTGGTAAGTCTGAAAACATCATGCGTGATTCATATTTGAAGCAtcacaaaatacatttaatagaTGAGTCTGTCTGCGGCTGTGGTTATACAAATATCTACTGATCATTTTGTGATTCActgctgttttctgtttatttatggttatgaTGGGAATTAAAATGTGCTCTGCCGAGTTTTGATGCAGAAAAtttaactctgcagtttaacagtgactttatatacatataacagAAAAAGTAGTCACATgccaatattcaataattcagtaTATCATAATAATGAacatgtaaaataatgaataattcttatttacacttttagagtgtcttttaagattattttattctGCAACATGTTGAACCCTTATTAAgccatttattttcaaacatgatGCTTT
>TCONS_00022208
ATCCACCAGACGCCTGACAGAACAGACGTGTATTGAGGAACTCTTCATTTGATACTCAGACAAGGCGAAAACTCAGATAATTAACTGCAGTAAACTCATTTATACACCCTAGAGAGCGTTATTTACTGctaataaatggaaaaaagtatGTTTCATGTTCCCGGTCCTTCCGGACAAAGAAGGCCGCCATGTAGACAGAGGATAGGGCCTTCTCCTGGTTCTGGtagatttgaatgtatttttaatgtttgattgATGTTGTTTAACCCTTGTGTTGCTGTTTCATACACACTGGGGTCATTTGGCCTCAACTTTCTCTCAGTTTCAGCAAATGGAGTGATTTTTTTAGTGACAaactattttgacatattttgggaaaaggcttttgaattaaaaaaaagtttcaaaaaacTTAATTCGGGGCAAATTGGCTTTGTTTATGTTGTTGGCTGTTACGGGTTAAATTGCTTTATGTTTATACTGTCTGTTCAGGCATAACTAGAAGCTGTCTCAAATGAACATGCTGTTTTTATCTTTCAGTGGAAGTAAAATATGACCTGAAAGAAAATATTGGAGCTGGCTGCTACGGCAATGTCTATCGTGGTATCAGAAAAGTGGACGGCAAACAGTTTATCATCAAGTCGACTTTTTCAGAAGTTGACAGCAATGTGGTAAGTCTGAAAACATCATGCGTGATTCATATTTGAAGCAtcacaaaatacatttaatagaTGAGTCTGTCTGCGGCTGTGGTTATACAAATATCTACTGATCATTTTGTGATTCActgctgttttctgtttatttatggttatgaTGGGAATTAAAATGTGCTCTGCCGAGTTTTGATGCAGAAAAtttaactctgcagtttaacagtgactttatatacatataacagAAAAAGTAGTCACATgccaatattcaataattcagtaTATCATAATAATGAacatgtaaaataatgaataattcttatttacacttttagagtgtcttttaagattattttattctGCAACATGTTGAACCCTTATTAAgccatttattttcaaacatgatGCTTT
>TCONS_00022209
GCAGTAAACTCATTTATACGCCCTAGAGAGCGTTATTTACTGctaataaatggaaaaaagtatGTTTCATGTTCCCGGTCCTTCCGGACAAAGAAGGCCGCCATGTAGACAGAGGATAGGGCCTTCTCCTGGTTCTGTGGAAGTAAAATATGACCTGAAAGAAAATATTGGAGCTGGCTGCTACGGCAATGTCTATCGTGGTATCAGAAAAGTGGACGGCAAACAGTTTATCATCAAGTCGACTTTTTCAGAAGTTGACAGCAATGTGGTAAGTCTGAAAACATCATGCGTGATTCATATTTGAAGCAtcacaaaatacatttaatagaTGAGTCTGTCTGCGGCTGTGGTTATACAAATATCTACTGATCATTTTGTGATTCActgctgttttctgtttatttatggttatgaTGGGAATTAAAATGTGCTCTGCCGAGTTTTGATGCAGAAAAtttaactctgcagtttaacagtgactttatatacatataacagAAAAAGTAGTCACATgccaatattcaataattcagtaTATCATAATAATGAacatgtaaaataatgaataattcttatttacacttttagagtgtcttttaagattattttattctGCAACATGTTGAACCCTTATTAAgccatttattttcaaacatgatGCTTT
>TCONS_00022211
CAGACGCATGTATTGAGGAACTCTTCATTTGATACTTAGACAAGGCAAAAACTCAGATAATTAACTGCAGTAAACTCATTTATACGCCCTAGAGAGCGTTATTTACTGctaataaatggaaaaaagtatGTTTCATGTTCCCGGTCCTTCCGGACAAAGAAGGCCGCCATGTAGACAGAGGATAGGGCCTTCTCCTGGTTCTGTGGAAGTAAAATATAACCTGAAAGAAAATATTGGAGCTGGCTGCTACGGCAATGTCTATCGTGGTATCAGAATAGTGGACGGCAAACAGTTTATCATCAAGTCGACTTTTTCAGAAGTTGACAGCAATGTGCCTGGATATCCGTTACCCATACCAATCGAAGTGGCCATGATGACAATTGCGAGAGATCCCCCAAGCCCGCTGCTCATCAAGCTCCAGGAATGGTTTTTAGTTAAAGTGGAGAAATTGCCAAGAGGAAAAGTGTGTAAGACAATAATGTTGGTGATGGAGTATCTCGGCCCGTGCAGAACACTGGAGGATTTCCTGCAGAAGCACCAACACCTGGAGGAGAGAGTCGCACATACGCTTATCCTGCAGATTGTCAAAGCAGCGCAGGAGTGCTTGAGGCGGAAAATTTGTCATCATGATATTCATGATTGTAATATCCTCGTCATCGACCCGCCTCTGCAAATCAAGCTAATTGATTTTGGCTGTGGGATGCACATCTGTCATGATCCAAAGAAATACCCACCAGACACAAGGATATCTCCAAAGAAGGCGGTTAAAAACACAGTGAAGCAGCTGTTTGACATCATGCGGGAAATAGAAAAACAATGTTCCAGCATACCTGaagAATTCATGGCATTTATGAATACCTGCATTACCCTTGGGGATGATGATCAGAGACTGCAAACAGTGCAGCAGATTCTGGATCAGCCATGGCT
>TCONS_00021301
CAGACGCATGTATTGAGGAACTCTTCATTTGATACTTAGACAAGGCAAAAACTCAGATAATTAACTGCAGTAAACTCATTTATACGCCCTAGAGAGCGTTATTTACTGctaataaatggaaaaaagtatGTTTCATGTTCCCGGTCCTTCCGGACAAAGAAGGCCGCCATGTAGACAGAGGATAGGGCCTTCTCCTGGTTCTGTGGAAGTAAAATATAACCTGAAAGAAAATATTGGAGCTGGCTGCTACGGCAATGTCTATCGTGGTATCAGAATAGTGGACGGCAAACAGTTTATCATCAAGTCGACTTTTTCAGAAGTTGACAGCAATGTGCCTGGATATCCGTTACCCATACCAATCGAAGTGGCCATGATGACAATTGCGAGAGATCCCCCAAGCCCGCTGCTCATCAAGCTCCAGGAATGGTTTTTAGTTAAAGTGGAGAAATTGCCAAGAGGAAAAGTGTGTAAGACAATAATGTTGGTGATGGAGTATCTCGGCCCGTGCAGAACACTGGAGGATTTCCTGC
>TCONS_00022212
TGTTTTTATCTTTCAGTGGAAGTAAAATATAACCTGAAAGAAAATATTGGAGCTGGCTGCTACGGCAATGTCTATCGTGGTATCAGAATAGTGGACGGCAAACAGTTTATCATCAAGTCGACTTTTTCAGAAGTTGACAGCAATGTGCCTGGATATCCGTTACCCATACCAATCGAAGTGGCCATGATGACAATTGCGAGAGATCCCCCAAGCCCGCTGCTCATCAAGCTCCAGGAATGGTTTTTAGTTAAAGTGGAGAAATTGCCAAGAGGAGTAGgtgtatttatacagcacatttcatgcacaatGCGCTGCAGGAGGGTTTGTCTCGTTTCTTATTGtcgttttaattttgtaaattcaaattcctaaatcaagaagcatttctggACATGTAAATaactttgtcttgttttcagaaaagcTTGTGGGTTAATGATATGCCGGTGCGAAAGTGTGTAAGACAA
>TCONS_00021302
TGTTTTTATCTTTCAGTGGAAGTAAAATATAACCTGAAAGAAAATATTGGAGCTGGCTGCTACGGCAATGTCTATCGTGGTATCAGAATAGTGGACGGCAAACAGTTTATCATCAAGTCGACTTTTTCAGAAGTTGACAGCAATGTGCCTGGATATCCGTTACCCATACCAATCGAAGTGGCCATGATGACAATTGCGAGAGATCCCCCAAGCCCGCTGCTCATCAAGCTCCAGGAATGGTTTTTAGTTAAAGTGGAGAAATTGCCAAGAGGAGTAGgtgtatttatacagcacatttcatgcacaatGCGCTGCAGGAGGGTTTGTCTCGTTTCTTATTGtcgttttaattttgtaaattcaaattcctaaatcaagaagcatttctggACATGTAAATaactttgtcttgttttc

Function

GO:

id name namespace
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004857 enzyme inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000093819

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022207 False 673 lncRNA 0.34 3 36578495 36579581
TCONS_00022208 False 1067 lncRNA 0.35 2 36578495 36579658
TCONS_00022209 False 664 lncRNA 0.35 3 36578495 36610570
TCONS_00022211 False 927 lncRNA 0.44 7 36605758 36610636
TCONS_00021301 False 530 processed_transcript 0.44 5 36608041 36610636
TCONS_00022212 False 467 lncRNA 0.40 4 36608095 36610132
TCONS_00021302 True 417 processed_transcript 0.40 3 36608694 36610132

Neighbor

gene id symbol gene type direction distance location
XLOC_010884 NA coding downstream 8028 36507489 ~ 36570467 (-)
XLOC_010883 NA coding downstream 86655 36491517 ~ 36491840 (-)
XLOC_010882 NA coding downstream 112850 36461637 ~ 36465645 (-)
XLOC_010881 NA coding downstream 154394 36398505 ~ 36424101 (-)
XLOC_010880 capn7 coding downstream 381795 36167907 ~ 36196700 (-)
XLOC_010887 pik3r4 coding upstream 110594 36721230 ~ 36748374 (-)
XLOC_010888 calb1 coding upstream 155298 36765934 ~ 36798783 (-)
XLOC_010889 pnp4b coding upstream 197288 36807924 ~ 36834633 (-)
XLOC_010890 tdp2a coding upstream 290913 36901549 ~ 36905789 (-)
XLOC_010891 aldh5a1 coding upstream 323547 36934183 ~ 36945900 (-)
XLOC_010626 CR392024.2 misc downstream 15683320 20895112 ~ 20895175 (-)
XLOC_010877 NA non-coding downstream 556651 36021296 ~ 36021844 (-)
XLOC_010892 NA non-coding upstream 346114 36956750 ~ 36959179 (-)
XLOC_010894 BX248115.1 non-coding upstream 546369 37157005 ~ 37157121 (-)
XLOC_010899 NA non-coding upstream 1588277 38198913 ~ 38341804 (-)
XLOC_010901 NA non-coding upstream 1775172 38385808 ~ 38394558 (-)
XLOC_010904 CU855886.1 non-coding upstream 1951891 38562527 ~ 38562644 (-)

Expression


Co-expression Network