XLOC_010889 (pnp4b)


Basic Information

Item Value
gene id XLOC_010889
gene name pnp4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36807924 ~ 36834633 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021308
CTCTTATCTGTTCTCACAGGACAAGTACACACTTTTCCAGGTGCTGCTGTCAGCCTGTGATTACCCGAGATCATGCACACAAAGGAAAACGCATGcTGCTGCTCGTTTGATGACTGCAAACTGACCACAGAATGGCTGCTGAGCAGGACAAGACACAGGCCGAAGATCGCCGTTGTGTGTGGATCTGGACTGGGTCTCCTGGCTGACAATGTACCCAACAAACAGAGCTTCCGCTACGAAGACATTCCCAACTTCCCAGTCAGCACAGTTCCTGGCCATGAAGGGTGTCTGGTATTTGGTCAAATAAAAGGCAAGTCGTGTGTCTTCATGCAAGGAAGGTTTCATCTCTACGAGGGCTATTCATTGTGTAAGGGCGTTTACTGTATGGTCAGTGGACCCAACTTTGAAACCATTGCTGAGGCACGCATGCTGCACATCTTGGGGAGCGACTCTGTTGGGATGAGCACAGTTCCTGAGGTGACTGTGGCCAAGCATTGTGGACTGCGGGTCATGGGTCTCTCGCTCATCACCAACAAGGTTTCTCTGGACTACAGCCGCGAGGAGAAGGTCAATCATGAAGAGGTGCTGCAGATCAGCAAAATGAGAGCAGAGATGCTCCAGAATGTGCTCATAACCTTTATTGCTCGCTCTCACCAAGTGGAGGCCATCAATGACAACAGCTGTATGTACTCCAATGCTGTGTAGGGTCAGTCAAAGCAGCCGAATCAAGAATGATGAGGCAGTACAGTATAGTATACTACAGATTTGAAATGCACCATGTTGTGGCTATTTTGCTTTATTTGCTTGGTTGAATGTGTAAGAATGTGTTTTGGGGAAGGGTTGATTTAGCTTCacattgtgttgtgttgttaCAGTAATGTATTTTCTTGCATTTTCAATGTGAAAgataaacaatgtaaatgaacatTGTTGAATTAAATTGTCTCCCTCTgttgaaa
>TCONS_00021309
ATCATTTCTTGGAAAGAAAATGGAGATTTCCTGCTCTTGCCATTTTTGCAGCCAATGAGACGAGACCTTTATAGTCCTCTGTGAGGTTATCGTTCCCTCTCTTATCTGTTCTCACAGGACAAGTACACACTTTTCCAGGTGCTGCTGTCAGCCTGTGATTACCCGAGATCATGCACACAAAGGAAAACGCATGcTGCTGCTCGTTTGATGACTGCAAACTGACCACAGAATGGCTGCTGAGCAGGACAAGACACAGGCCGAAGATCGCCGTTGTGTGTGGATCTGGACTGGGTCTCCTGGCTGACAATGTACCCAACAAACAGAGCTTCCGCTACGAAGACATTCCCAACTTCCCAGTCAGCACAGTTCCTGGCCATGAAGGGTGTCTGGTATTTGGTCAAATAAAAGGCAAGTCGTGTGTCTTCATGCAAGGAAGGTTTCATCTCTACGAGGGCTATTCATTGTGTAAGGTCACGTTCCCAGTGCGGATCTTCAAATTAATGGGTGTGGAGACCATTATCGTAACAAACGCCTCTGGAGGACTTTGTCAGGATTTCAAAGTGGGAGACATCATGGTCATTAAGGACCATATTAACTTGCCGGGCTTTGCTGGACAGCACCCGCTGTGTGGTCCAAATGATGAACGGTTTGGCATCCGGTTTCCTTGCATGTCTGATGCTTACAGCAAAGACCTCAGGAAACTAGTTATGGACATCACTGCAGAGCTGGGCTACTCCAACTTTGTGCATGAGGGCGTTTACTGTATGGTCAGTGGACCCAACTTTGAAACCATTGCTGAGGCACGCATGCTGCACATCTTGGGGAGCGACTCTGTTGGGATGAGCACAGTTCCTGAGGTGACTGTGGCCAAGCATTGTGGACTGCGGGTCATGGGTCTCTCGCTCATCACCAACAAGGTTTCTCTGGACTACAGCCGCGAGGAGAAGGTCAATCATGAAGAGGTGCTGCAGATCAGCAAAATGAGAGCAGAGATGCTCCAGAATGTGCTCATAACCTTTATTGCTCGCTCTCACCAAGTGGAGGCCATCAATGACAACAGCTGTATGTACTCCAATGCTGTGTAGGGTCAGTCAAAGCAGCCGAATCAAGAATGATGAGGCAGTACAGTATAGTATACTACAGATTTGAAATGCACCATGTTGTGGCTATTTTGCTTTATTTGCTTGGTTGAATGTGTAAGAATGTGTTTTGGGGAAGGGTTGATTTAGCTTCacattgtgttgtgttgttaCAGTAATGTATTTTCTTGCATTTTCAATGTGAAAgataaacaatgtaaatgaacatTGTTGAATTAAATTGTCTCCCTCTgttgaaa
>TCONS_00021310
ACTTTTCCAGGTGCTGCTGTCAGCCTGTGATTACCCGAGATCATGCACACAAAGGAAAACGCATGcTGCTGCTCGTTTGATGACTGCAAACTGACCACAGAATGGCTGCTGAGCAGGACAAGACACAGGCCGAAGATCGCCGTTGTGTGTGGATCTGGACTGGGTCTCCTGGCTGACAATGTACCCAACAAACAGAGCTTCCGCTACGAAGACATTCCCAACTTCCCAGTCAGCACAGTTCCTGGCCATGAAGGGTGTCTGGTATTTGGTCAAATAAAAGGCAAGTCGTGTGTCTTCATGCAAGGAAGGTTTCATCTCTACGAGGGCTATTCATTGTGTAAGGTCACGTTCCCAGTGCGGATCTTCAAATTAATGGGTGTGGAGACCATTATCGTAACAAACGCCTCTGGAGGACTTTGTCAGGATTTCAAAGTGGGAGACATCATGGTCATTAAGGACCATATTAACTTGCCGGGCTTTGCTGGACAGCACCCGCTGTGTGGTCCAAATGATGAACGGTTTGGCATCCGGTTTCCTTGCATGTCTGATGCTTACAGCAAAGACCTCAGGAAACTAGTTATGGACATCACTGCAGAGCTGGGCTACTCCAACTTTGTGCATGAGGGCGTTTACTGTATGGTCAGTGGACCCAACTTTGAAACCATTGCTGAGGCACGCATGCTGCACATCTTGGGGAGCGACTCTGTTGGTATGGATTGAACAAATgcttacaaaaagaaaaatgacGAAGGCTACAGAGCTACTGCTGTGAAAGTGTATGACCCAAATTGTTAAAACAGACCATCACTTTATATACAAGTAAACTCTTAAAACATAGTTATACTGATCAAATACTGTTACACATAATCATAtagttttttttcagcttttc
>TCONS_00021311
TGTTATCAGTGACAGCATCTGATGCTTTATTTACTCATTACTGAGAGGTTATGCATTAGAAGAATAACCCCTTAGGAAGACTTCATATATTAGGGAGAGAGCAAAGCATAAAAGTAGGAGGCTGTTTATCAGTTCCTGGCCATGAAGGGTGTCTGGTATTTGGTCAAATAAAAGGCAAGTCGTGTGTCTTCATGCAAGGAAGGTTTCATCTCTACGAGGGCTATTCATTGTGTAAGGTCACGTTCCCAGTGCGGATCTTCAAATTAATGGGTGTGGAGACCATTATCGTAACAAACGCCTCTGGAGGACTTTGTCAGGATTTCAAAGTGGGAGACATCATGGTCATTAAGGACCATATTAACTTGCCGGGCTTTGCTGGACAGCACCCGCTGTGTGGTCCAAATGATGAACGGTTTGGCATCCGGTTTCCTTGCATGTCTGATGCTTACAGCAAAGACCTCAGGAAACTAGTTATGGACATCACTGCAGAGCTGGGCTACTCCAACTTTGTGCATGAGGGCGTTTACTGTATGGTCAGTGGACCCAACTTTGAAACCATTGCTGAGGCACGCATGCTGCACATCTTGGGGAGCGACTC

Function

symbol description
pnp4b Predicted to enable purine-nucleoside phosphorylase activity. Predicted to act upstream of or within nucleoside metabolic process. Predicted to be active in cytoplasm. Is expressed in intestinal bulb and liver. Human ortholog(s) of this gene implicated in purine nucleoside phosphorylase deficiency and purine-pyrimidine metabolic disorder. Orthologous to human PNP (purine nucleoside phosphorylase).

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0009116 nucleoside metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004731 purine-nucleoside phosphorylase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1887 Predicted to enable purine-nucleoside phosphorylase activity. Predicted to act upstream of or within nucleoside metabolic process. Predicted to be active in cytoplasm. Is expressed in intestinal bulb and liver. Human ortholog(s) of this gene implicated in purine nucleoside phosphorylase deficiency and purine-pyrimidine metabolic disorder. Orthologous to human PNP (purine nucleoside phosphorylase).

Ensembl:

ensembl_id ENSDARG00000029230

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021308 False 959 mRNA 0.46 5 36807924 36834535
TCONS_00021309 False 1339 mRNA 0.46 6 36807924 36834633
TCONS_00021310 False 892 mRNA 0.46 5 36814035 36834505
TCONS_00021311 True 598 processed_transcript 0.46 4 36814223 36829185

Neighbor

gene id symbol gene type direction distance location
XLOC_010888 calb1 coding downstream 9141 36765934 ~ 36798783 (-)
XLOC_010887 pik3r4 coding downstream 59550 36721230 ~ 36748374 (-)
XLOC_010885 NA coding downstream 197288 36578495 ~ 36610636 (-)
XLOC_010886 NA coding downstream 208184 36580443 ~ 36599740 (-)
XLOC_010884 NA coding downstream 237457 36507489 ~ 36570467 (-)
XLOC_010890 tdp2a coding upstream 66916 36901549 ~ 36905789 (-)
XLOC_010891 aldh5a1 coding upstream 99550 36934183 ~ 36945900 (-)
XLOC_010892 NA coding upstream 122117 36956750 ~ 36959179 (-)
XLOC_010893 snrnp48 coding upstream 139890 36974523 ~ 36979597 (-)
XLOC_010894 BX248115.1 coding upstream 322372 37157005 ~ 37157121 (-)
XLOC_010626 CR392024.2 misc downstream 15912749 20895112 ~ 20895175 (-)
XLOC_010883 NA non-coding downstream 316084 36491517 ~ 36491840 (-)
XLOC_010882 NA non-coding downstream 342279 36461637 ~ 36465645 (-)
XLOC_010899 NA non-coding upstream 1364280 38198913 ~ 38341804 (-)
XLOC_010901 NA non-coding upstream 1551175 38385808 ~ 38394558 (-)
XLOC_010904 CU855886.1 non-coding upstream 1727894 38562527 ~ 38562644 (-)

Expression


Co-expression Network