RNA id: TCONS_00023679


Basic Information

Item Value
RNA id TCONS_00023679
length 642
RNA type nonsense_mediated_decay
GC content 0.47
exon number 5
gene id XLOC_011987
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 15121977 ~ 15189502 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tGCATATAGGTTACCTTCCAAACAAGAGAGTCCTTGGTCTGAGTAAATTAGCACGAATCGTTGAGATATACAGCAGGAGATTGCAAGTTCAGGAGCGTCTGACCAAACAGATCGCCGTGGCCATTACTGAAGCTCTGCAGCCTGCTGGTGTCGGGGTGGTGGTCGAAGCGACTCACATGTGTATGGTCATGCGCGGCGTCCAGAAGATGAACAGCAAGACTGTGACCAGCACCATGTTAGGTGTTTTCCGCGAAGATCCCAAGACACGAGATGAGTTCCTGACCCTGATCCGGAGCTGAGAGGGTCAGAGCGCTCCTCCACTGCCAAAACACTCTGACCAACCCTGCTCTCCAGCGCCTCCCTGGACTCCAGGACTTATATTCTGTGATTCCGCCTGCGGTCGAGGCTTTGCTGCTGTGTAACATAGAGCTTATTTGGaccaaaggtGAAGGCGCAGTCGAGGTCAACACACACTATCTAATTTTGCACATTGTGGGATTCATGAAGTTCTAACGGTATGAAGAAAACTAAATGTGATCTTtctaattaaaatatacaataaaaaaggatgtaaagCAACTCAGAAGATCTTTTAAGAGTCTTTGCAGAccatattttgtacatttactcTGACGCATGTTT

Function

GO:

id name namespace
GO:0006729 tetrahydrobiopterin biosynthetic process biological_process
GO:0046654 tetrahydrofolate biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003934 GTP cyclohydrolase I activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko00790 Folate biosynthesis

ZFIN:

id description
ZDB-GENE-070720-5 Predicted to enable GTP binding activity; GTP cyclohydrolase I activity; and zinc ion binding activity. Predicted to be involved in tetrahydrobiopterin biosynthetic process. Predicted to act upstream of or within tetrahydrofolate biosynthetic process. Predicted to be active in cytoplasm. Is expressed in brain; dopaminergic neurons; trunk; and xanthophore. Human ortholog(s) of this gene implicated in BH4-deficient hyperphenylalaninemia B; bipolar disorder; dystonia; and dystonia 5. Orthologous to human GCH1 (GTP cyclohydrolase 1).

Ensembl:

ensembl_id ENSDART00000148725

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024863 lncRNA downstream 2459 15111493 ~ 15119518 (-) False XLOC_011986
TCONS_00024864 lncRNA downstream 2459 15111493 ~ 15119518 (-) False XLOC_011986
TCONS_00024862 lncRNA downstream 2459 15111493 ~ 15119518 (-) False XLOC_011986
TCONS_00024861 lncRNA downstream 2459 15111493 ~ 15119518 (-) True XLOC_011986
TCONS_00024860 lncRNA downstream 2471 15111493 ~ 15119506 (-) False XLOC_011986
TCONS_00023688 lncRNA upstream 91787 15223224 ~ 15229758 (-) True XLOC_011989
TCONS_00024865 lncRNA upstream 171400 15302837 ~ 15304923 (-) True XLOC_011991
TCONS_00024866 lncRNA upstream 284281 15415718 ~ 15428828 (-) False XLOC_011993
TCONS_00023691 lncRNA upstream 290456 15421893 ~ 15428838 (-) True XLOC_011993
TCONS_00024867 lncRNA upstream 610064 15741501 ~ 15743996 (-) True XLOC_012001
TCONS_00023675 mRNA downstream 92338 15018219 ~ 15029639 (-) False XLOC_011984
TCONS_00023674 mRNA downstream 92550 15018219 ~ 15029427 (-) False XLOC_011984
TCONS_00023676 mRNA downstream 92655 15018222 ~ 15029322 (-) False XLOC_011984
TCONS_00023677 mRNA downstream 92719 15018517 ~ 15029258 (-) True XLOC_011984
TCONS_00023672 mRNA downstream 155593 14918101 ~ 14966384 (-) False XLOC_011983
TCONS_00023681 mRNA upstream 17263 15148700 ~ 15149192 (-) False XLOC_011987
TCONS_00023682 mRNA upstream 17360 15148797 ~ 15189502 (-) False XLOC_011987
TCONS_00023683 mRNA upstream 18506 15149943 ~ 15189397 (-) False XLOC_011987
TCONS_00023685 mRNA upstream 52460 15183897 ~ 15188440 (-) True XLOC_011987
TCONS_00023686 mRNA upstream 65290 15196727 ~ 15201031 (-) True XLOC_011988
TCONS_00023673 other downstream 185555 14919210 ~ 14936422 (-) True XLOC_011983
TCONS_00023657 other downstream 416929 14694275 ~ 14705048 (-) False XLOC_011978
TCONS_00023653 other downstream 430401 14664380 ~ 14691576 (-) True XLOC_011977
TCONS_00023652 other downstream 450882 14645298 ~ 14671095 (-) False XLOC_011977
TCONS_00023643 other downstream 670356 14447126 ~ 14451621 (-) True XLOC_011974
TCONS_00023684 other upstream 18588 15150025 ~ 15189385 (-) False XLOC_011987
TCONS_00023693 other upstream 346029 15477466 ~ 15480248 (-) False XLOC_011994
TCONS_00023708 other upstream 750629 15882066 ~ 15899463 (-) True XLOC_012004
TCONS_00023714 other upstream 1720835 16852272 ~ 16852405 (-) True XLOC_012014
TCONS_00023716 other upstream 1775086 16906523 ~ 16965809 (-) False XLOC_012015

Expression Profile

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