RNA id: TCONS_00023954


Basic Information

Item Value
RNA id TCONS_00023954
length 820
RNA type processed_transcript
GC content 0.41
exon number 3
gene id XLOC_012154
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 27186948 ~ 27235797 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTGGCAGCCTCTGTACATACGGTTCGTCATGAGCAGGATGAAGAAGTAAAGCAGCTCTCTCAACTGCGAGACTCACTTAGAACACAGCTACAAGTGGATGGCAAAGAGGATTTTCTGAACAGAAAGAACTCCGGTCATGGATACAGTATCCACCAGCCTCAAGGCAATAAGAAATATGGCACAGAAAAATCAGGATTCCTTCTAAAAAAGAGCGATGGGTGAGTTGCACACTACTGTCTATTCGGCTCAAGGTTGAAAAGGTCACAACCCAttccaaaaacaacaacaacagacaaattatttatttattagctggACTTGTCCAAGGTTTTCCAGACATGATGCAGTTTTCAGCTCCTGTTTGCTTTTGGTCACATGGGGTGACTGTGTTCCTCTGGAAACATAGCTCTCAGTGTGTGTAGTGAAATATAGGCCCCTATCCTAAAGCTGAATGAAGAAGTGAGTTATAATATCCTGAGAGAGTTATGGAGATTGTTAGCAGCACAAAGCATCAGTCTGAGCTCTGTGACTTTAGGCCCACAGCCGAGATTGTGTGTTTTTGTCACAGTGTTCCTCTCACACAGATGTTTTCTATTAAATGTGCTTCAATCTCCTGCTGCACTACAGTCTTACTTGCACTCTCTTCAAACCTCAGAGTCCAACATACAGCTCACATGCAgtacatccggaaagtattcatagcgcttccctttttccaaatttttttatgctacagccttattccaaaatggattagattaatttatttcctaaaaatgctacacacaataccccataatgacaatgtaaaaaaaaga

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0016477 cell migration biological_process
GO:0005925 focal adhesion cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-39 Predicted to enable GTPase activator activity. Predicted to act upstream of or within cell migration and positive regulation of GTPase activity. Predicted to be located in cytoplasm and focal adhesion. Orthologous to human ASAP3 (ArfGAP with SH3 domain, ankyrin repeat and PH domain 3).

Ensembl:

ensembl_id ENSDART00000138724

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023948 lncRNA downstream 217362 26982035 ~ 26985759 (-) True XLOC_012152
TCONS_00024911 lncRNA downstream 234780 26950412 ~ 26968341 (-) True XLOC_012151
TCONS_00024910 lncRNA downstream 400385 26800971 ~ 26802736 (-) True XLOC_012147
TCONS_00023941 lncRNA downstream 401377 26783926 ~ 26801744 (-) False XLOC_012147
TCONS_00023937 lncRNA downstream 592334 26609651 ~ 26610787 (-) True XLOC_012145
TCONS_00024912 lncRNA upstream 196837 27402643 ~ 27403751 (-) True XLOC_012158
TCONS_00023965 lncRNA upstream 208858 27414664 ~ 27419261 (-) True XLOC_012159
TCONS_00023974 lncRNA upstream 893901 28099707 ~ 28101972 (-) False XLOC_012161
TCONS_00023975 lncRNA upstream 893901 28099707 ~ 28101975 (-) True XLOC_012161
TCONS_00023980 lncRNA upstream 1437652 28643458 ~ 28652512 (-) True XLOC_012166
TCONS_00023952 mRNA downstream 2487 27186948 ~ 27200634 (-) False XLOC_012154
TCONS_00023951 mRNA downstream 3096 27186948 ~ 27200025 (-) False XLOC_012154
TCONS_00023950 mRNA downstream 154481 26990620 ~ 27048640 (-) True XLOC_012153
TCONS_00023949 mRNA downstream 154584 26990531 ~ 27048537 (-) False XLOC_012153
TCONS_00023947 mRNA downstream 267782 26928418 ~ 26935339 (-) True XLOC_012150
TCONS_00023957 mRNA upstream 37641 27243447 ~ 27266053 (-) True XLOC_012155
TCONS_00023958 mRNA upstream 65593 27271399 ~ 27273296 (-) True XLOC_012156
TCONS_00023959 mRNA upstream 108282 27314088 ~ 27382868 (-) False XLOC_012157
TCONS_00023960 mRNA upstream 129737 27335543 ~ 27382868 (-) False XLOC_012157
TCONS_00023961 mRNA upstream 132734 27338540 ~ 27382826 (-) False XLOC_012157
TCONS_00023944 other downstream 329081 26867691 ~ 26874040 (-) True XLOC_012148
TCONS_00023940 other downstream 482127 26716160 ~ 26720994 (-) True XLOC_012146
TCONS_00023928 other downstream 1338702 25864305 ~ 25864419 (-) True XLOC_012140
TCONS_00023915 other downstream 1614691 25587625 ~ 25588430 (-) True XLOC_012133
TCONS_00023914 other downstream 1616263 25585487 ~ 25586858 (-) True XLOC_012132
TCONS_00023956 other upstream 9085 27214891 ~ 27235466 (-) True XLOC_012154
TCONS_00023977 other upstream 1324661 28530467 ~ 28530582 (-) True XLOC_012163
TCONS_00023979 other upstream 1418242 28624048 ~ 28624176 (-) True XLOC_012165
TCONS_00023990 other upstream 1603898 28809704 ~ 28811638 (-) True XLOC_012171
TCONS_00023997 other upstream 2010561 29216367 ~ 29224911 (-) True XLOC_012176

Expression Profile

//