RNA id: TCONS_00023961


Basic Information

Item Value
RNA id TCONS_00023961
length 747
RNA type mRNA
GC content 0.53
exon number 7
gene id XLOC_012157
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 27314088 ~ 27382868 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGCCCGCGCGGGCATATTTATTTCCGCAAGCAGGAGCGCACGCGGCCACCATCCTCATCACCTTCTTCGTCCTGCAGCTCGTCGCTCAGCTCGAAATGGCAAACAAGAGCGTTTTGCCAACCAAAGAGCGCGCGCTGAAGGGCAGGGAAGAGAAAGTGGTCGTGGCAGCAAAACACGCCGCCAATGGAAACACTACAGTGGAGCCGTTTCCTGACGGGATGGAGATGATTATGTTTGGCATGGGCTGTTTTTGGGGAGCTGAAAGGCGTTTCTGGAAGATCACTGGTGTGTTTTCTACACAAGTGGGCTATGCTGGAGGCTTCACATCTAACCCTACCTACCATGAGGTGTGTTCAGGTTTAACAGGGCACACGGAAGTAGTGCGAGTGGTCTTCTCTCCCAAAGATGTCAGCTTGGAGAAACTTCTCAAAGTCTTCTGGGAAAGCCACGACCCCACTCAAGGAATGGCACAGGGGAATGACCATGGCACACAGTACCGTTCTGCCATCTACACCTACAGCCCAGAACAGCAAGATCTGGCCATGAAGAGCAAACATATGTACCAGGAGgCTCTGAGCAGGAAAGGCCTGGGCGAAATCACCACAGACATCCGGCAGCTCACAGTTTTTTACTACGCTGAAGATTATCACCAGCAGTACCTGCACAAGGTGCCAAAGGGATACTGTGGGTTAAAGGGCACCGGTGTGACCTGCTCTATTACAGAGGGGAGAGATGAACTATGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0034599 cellular response to oxidative stress biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008113 peptide-methionine (S)-S-oxide reductase activity molecular_function
GO:0036456 L-methionine-(S)-S-oxide reductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-123 Predicted to enable L-methionine-(S)-S-oxide reductase activity and peptide-methionine (S)-S-oxide reductase activity. Predicted to be involved in cellular response to oxidative stress. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human MSRA (methionine sulfoxide reductase A).

Ensembl:

ensembl_id ENSDART00000186657

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023948 lncRNA downstream 352781 26982035 ~ 26985759 (-) True XLOC_012152
TCONS_00024911 lncRNA downstream 370199 26950412 ~ 26968341 (-) True XLOC_012151
TCONS_00024910 lncRNA downstream 535804 26800971 ~ 26802736 (-) True XLOC_012147
TCONS_00023941 lncRNA downstream 536796 26783926 ~ 26801744 (-) False XLOC_012147
TCONS_00023937 lncRNA downstream 727753 26609651 ~ 26610787 (-) True XLOC_012145
TCONS_00024912 lncRNA upstream 19817 27402643 ~ 27403751 (-) True XLOC_012158
TCONS_00023965 lncRNA upstream 31838 27414664 ~ 27419261 (-) True XLOC_012159
TCONS_00023974 lncRNA upstream 716881 28099707 ~ 28101972 (-) False XLOC_012161
TCONS_00023975 lncRNA upstream 716881 28099707 ~ 28101975 (-) True XLOC_012161
TCONS_00023980 lncRNA upstream 1260632 28643458 ~ 28652512 (-) True XLOC_012166
TCONS_00023958 mRNA downstream 65244 27271399 ~ 27273296 (-) True XLOC_012156
TCONS_00023957 mRNA downstream 72487 27243447 ~ 27266053 (-) True XLOC_012155
TCONS_00023953 mRNA downstream 102743 27191321 ~ 27235797 (-) False XLOC_012154
TCONS_00023955 mRNA downstream 114575 27203717 ~ 27223965 (-) False XLOC_012154
TCONS_00023952 mRNA downstream 137906 27186948 ~ 27200634 (-) False XLOC_012154
TCONS_00023963 mRNA upstream 25092 27407918 ~ 27419319 (-) False XLOC_012159
TCONS_00023964 mRNA upstream 26063 27408889 ~ 27419499 (-) False XLOC_012159
TCONS_00023966 mRNA upstream 588318 27971144 ~ 27976031 (-) False XLOC_012160
TCONS_00023967 mRNA upstream 588384 27971210 ~ 27972307 (-) True XLOC_012160
TCONS_00023968 mRNA upstream 699615 28082441 ~ 28100741 (-) False XLOC_012161
TCONS_00023956 other downstream 103074 27214891 ~ 27235466 (-) True XLOC_012154
TCONS_00023954 other downstream 132734 27203121 ~ 27205806 (-) False XLOC_012154
TCONS_00023944 other downstream 464500 26867691 ~ 26874040 (-) True XLOC_012148
TCONS_00023940 other downstream 617546 26716160 ~ 26720994 (-) True XLOC_012146
TCONS_00023928 other downstream 1474121 25864305 ~ 25864419 (-) True XLOC_012140
TCONS_00023977 other upstream 1147641 28530467 ~ 28530582 (-) True XLOC_012163
TCONS_00023979 other upstream 1241222 28624048 ~ 28624176 (-) True XLOC_012165
TCONS_00023990 other upstream 1426878 28809704 ~ 28811638 (-) True XLOC_012171
TCONS_00023997 other upstream 1833541 29216367 ~ 29224911 (-) True XLOC_012176
TCONS_00024000 other upstream 1890137 29272963 ~ 29273081 (-) True XLOC_012179

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00010949 True 2841 mRNA 0.44 2 CM030133.1 5400289 ~ 5410795 (-)