Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00024007 |
| length | 1991 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 9 |
| gene id | XLOC_012184 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007128.7 |
| NCBI id | CM002901.2 |
| chromosome length | 53461100 |
| location | 29797876 ~ 29902187 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0071599 | otic vesicle development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0005496 | steroid binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0004879 | nuclear receptor activity | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0003707 | steroid hormone receptor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030821-2 | Enables DNA-binding transcription factor activity. Acts upstream of or within otic vesicle development and transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in basal plate midbrain region; nervous system; pronephric duct; and tail bud. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 35. Orthologous to several human genes including ESRRG (estrogen related receptor gamma). |
| ensembl_id | ENSDART00000009104 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00024005 | lncRNA | downstream | 74663 | 29722085 ~ 29723213 (-) | True | XLOC_012183 |
| TCONS_00024918 | lncRNA | downstream | 576813 | 29216066 ~ 29221063 (-) | False | XLOC_012176 |
| TCONS_00024917 | lncRNA | downstream | 775197 | 28944581 ~ 29022679 (-) | True | XLOC_012172 |
| TCONS_00023991 | lncRNA | downstream | 775375 | 28944581 ~ 29022501 (-) | False | XLOC_012172 |
| TCONS_00024916 | lncRNA | downstream | 775377 | 28944581 ~ 29022499 (-) | False | XLOC_012172 |
| TCONS_00024009 | lncRNA | upstream | 73822 | 29976009 ~ 30054157 (-) | True | XLOC_012185 |
| TCONS_00024919 | lncRNA | upstream | 175144 | 30077331 ~ 30082713 (-) | True | XLOC_012186 |
| TCONS_00024920 | lncRNA | upstream | 249580 | 30151767 ~ 30225524 (-) | False | XLOC_012187 |
| TCONS_00024921 | lncRNA | upstream | 301437 | 30203624 ~ 30225524 (-) | True | XLOC_012187 |
| TCONS_00024922 | lncRNA | upstream | 375944 | 30278131 ~ 30280713 (-) | True | XLOC_012188 |
| TCONS_00024003 | mRNA | downstream | 26237 | 29376854 ~ 29771639 (-) | False | XLOC_012181 |
| TCONS_00024006 | mRNA | downstream | 61857 | 29732153 ~ 29736019 (-) | True | XLOC_012181 |
| TCONS_00024001 | mRNA | downstream | 485370 | 29282863 ~ 29312506 (-) | False | XLOC_012180 |
| TCONS_00024002 | mRNA | downstream | 486041 | 29283630 ~ 29311835 (-) | True | XLOC_012180 |
| TCONS_00023999 | mRNA | downstream | 526517 | 29251662 ~ 29271359 (-) | True | XLOC_012178 |
| TCONS_00024010 | mRNA | upstream | 237912 | 30140099 ~ 30205302 (-) | False | XLOC_012187 |
| TCONS_00024012 | mRNA | upstream | 405267 | 30307454 ~ 30366705 (-) | False | XLOC_012189 |
| TCONS_00024013 | mRNA | upstream | 567557 | 30469744 ~ 30473374 (-) | False | XLOC_012191 |
| TCONS_00024015 | mRNA | upstream | 571320 | 30473507 ~ 30521043 (-) | True | XLOC_012192 |
| TCONS_00024016 | mRNA | upstream | 702632 | 30604819 ~ 30652738 (-) | False | XLOC_012194 |
| TCONS_00024004 | other | downstream | 160555 | 29637205 ~ 29637321 (-) | True | XLOC_012182 |
| TCONS_00024000 | other | downstream | 524795 | 29272963 ~ 29273081 (-) | True | XLOC_012179 |
| TCONS_00023997 | other | downstream | 572965 | 29216367 ~ 29224911 (-) | True | XLOC_012176 |
| TCONS_00023990 | other | downstream | 986238 | 28809704 ~ 28811638 (-) | True | XLOC_012171 |
| TCONS_00023979 | other | downstream | 1173700 | 28624048 ~ 28624176 (-) | True | XLOC_012165 |
| TCONS_00024011 | other | upstream | 274249 | 30176436 ~ 30204529 (-) | False | XLOC_012187 |
| TCONS_00024018 | other | upstream | 719233 | 30621420 ~ 30635295 (-) | True | XLOC_012194 |
| TCONS_00024025 | other | upstream | 998585 | 30900772 ~ 30901872 (-) | False | XLOC_012199 |
| TCONS_00024027 | other | upstream | 1003527 | 30905714 ~ 30911622 (-) | False | XLOC_012199 |
| TCONS_00024055 | other | upstream | 1450008 | 31352195 ~ 31360599 (-) | False | XLOC_012207 |
