RNA id: TCONS_00024009


Basic Information

Item Value
RNA id TCONS_00024009
length 668
lncRNA type lincRNA
GC content 0.47
exon number 3
gene id XLOC_012185
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 29976009 ~ 30054157 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAATGAAAACGTCCCGTTAGAGGCAGTGGACGCCGCAGCTGATTGGACAGGAGTTTAAAAAGCaggcactgtcactttaagaagcAGTTCTTACCTGGACAGCCGCCACAGAAGGTAACCTACGCTTTATATCTTCAGCACGACTACATTCATGTACATATAGCTTTTAATCACCCACTTTTGCTTCAAAATAACCTTAGGCTGCTGTCAAAAAGGCTTTTCAGCCCCTGTCAACTATCTGTCAGTGTATGGAAAAGAACAGCATGAACATGCCTCAGAAGGTCTACTTTTGTCTCGTACAGTTTTGCGGTGACATCAGGAAGTGGCTGGTTCAATATTATGGCATCCCTGGTGACATGAGTAGAGGAGCTATTATGACTGATGCTCCAGAGGAAGGGGAGGAAAAAGCCAACGGTGTGGTTTGGGTTCTTCGCTGAGAGCTCTGGAAACCCGACCCTCACCGTCCAACCGGAACAGGAGGAGGGATGATCAGGGGACTTGTTGCAATCGCTCAACCCTATTCCCAACCGCACACACCAACACACTCCTTCTGTCATGCCCACCTTCTtcctttcttcttcttttcctttttttgtccTGTATGGAAATACGTGCCTGCCATTATTGGTGTATTTCTTTAGACGTGTCAGGAATTCGAGGCTTGGGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194807

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024005 lncRNA downstream 252796 29722085 ~ 29723213 (-) True XLOC_012183
TCONS_00024918 lncRNA downstream 754946 29216066 ~ 29221063 (-) False XLOC_012176
TCONS_00024917 lncRNA downstream 953330 28944581 ~ 29022679 (-) True XLOC_012172
TCONS_00023991 lncRNA downstream 953508 28944581 ~ 29022501 (-) False XLOC_012172
TCONS_00024916 lncRNA downstream 953510 28944581 ~ 29022499 (-) False XLOC_012172
TCONS_00024919 lncRNA upstream 23174 30077331 ~ 30082713 (-) True XLOC_012186
TCONS_00024920 lncRNA upstream 97610 30151767 ~ 30225524 (-) False XLOC_012187
TCONS_00024921 lncRNA upstream 149467 30203624 ~ 30225524 (-) True XLOC_012187
TCONS_00024922 lncRNA upstream 223974 30278131 ~ 30280713 (-) True XLOC_012188
TCONS_00024923 lncRNA upstream 252058 30306215 ~ 30369525 (-) False XLOC_012189
TCONS_00024007 mRNA downstream 73822 29797876 ~ 29902187 (-) False XLOC_012184
TCONS_00024008 mRNA downstream 98673 29798216 ~ 29877336 (-) True XLOC_012184
TCONS_00024003 mRNA downstream 204370 29376854 ~ 29771639 (-) False XLOC_012181
TCONS_00024006 mRNA downstream 239990 29732153 ~ 29736019 (-) True XLOC_012181
TCONS_00024001 mRNA downstream 663503 29282863 ~ 29312506 (-) False XLOC_012180
TCONS_00024010 mRNA upstream 85942 30140099 ~ 30205302 (-) False XLOC_012187
TCONS_00024012 mRNA upstream 253297 30307454 ~ 30366705 (-) False XLOC_012189
TCONS_00024013 mRNA upstream 415587 30469744 ~ 30473374 (-) False XLOC_012191
TCONS_00024015 mRNA upstream 419350 30473507 ~ 30521043 (-) True XLOC_012192
TCONS_00024016 mRNA upstream 550662 30604819 ~ 30652738 (-) False XLOC_012194
TCONS_00024004 other downstream 338688 29637205 ~ 29637321 (-) True XLOC_012182
TCONS_00024000 other downstream 702928 29272963 ~ 29273081 (-) True XLOC_012179
TCONS_00023997 other downstream 751098 29216367 ~ 29224911 (-) True XLOC_012176
TCONS_00023990 other downstream 1164371 28809704 ~ 28811638 (-) True XLOC_012171
TCONS_00023979 other downstream 1351833 28624048 ~ 28624176 (-) True XLOC_012165
TCONS_00024011 other upstream 122279 30176436 ~ 30204529 (-) False XLOC_012187
TCONS_00024018 other upstream 567263 30621420 ~ 30635295 (-) True XLOC_012194
TCONS_00024025 other upstream 846615 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024027 other upstream 851557 30905714 ~ 30911622 (-) False XLOC_012199
TCONS_00024055 other upstream 1298038 31352195 ~ 31360599 (-) False XLOC_012207

Expression Profile

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