RNA id: TCONS_00024920


Basic Information

Item Value
RNA id TCONS_00024920
length 549
lncRNA type read_through
GC content 0.51
exon number 3
gene id XLOC_012187
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 30140099 ~ 30225524 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTTAACCGCGGACTTGAACCTCATCGTCACTGTCAACtatgctctgcatctcaagtatGCAGACAGCGTGTCAAGCTACCAGAttaactggtaacagcggaaaagccgaccacatgcagATATTCTGTCTGGATGTGATACAGGCAAGATACAAGACGTCCTGCGAGTTCCCGGCAATACAGATAACCGCTGACAGACGCCAGCCAATTTGCTGTCCCGCCGCACCAGAGCAAGGCACTAGAAATATGGGCTGAGGAGTGACCCTTTGGCTGTGTCGCCCATCCATCCGAACCTGGTGGTGGGCTGGCCACCGTGGTAATTGCCTGCGAAACAGTGTTTTGACAAGCCAGACGGGTGTAAGCCATCATTCTAGCAGCACGGTGATGAGGTGTCACCTGGAGAGAGCTGTTGAGAGCCCACATGTTTACATGCAGCCAGGAACTCCGCTGTGACCAGTGTGCTTGCTTTGGAGAACAAAACTACACTGATCCTAAATTGGTCTATAGTGTTGACTTCCTTGGACTCCATGACTTATGCTCATATAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024919 lncRNA downstream 69054 30077331 ~ 30082713 (-) True XLOC_012186
TCONS_00024009 lncRNA downstream 97610 29976009 ~ 30054157 (-) True XLOC_012185
TCONS_00024005 lncRNA downstream 428554 29722085 ~ 29723213 (-) True XLOC_012183
TCONS_00024918 lncRNA downstream 930704 29216066 ~ 29221063 (-) False XLOC_012176
TCONS_00024917 lncRNA downstream 1129088 28944581 ~ 29022679 (-) True XLOC_012172
TCONS_00024922 lncRNA upstream 52607 30278131 ~ 30280713 (-) True XLOC_012188
TCONS_00024923 lncRNA upstream 80691 30306215 ~ 30369525 (-) False XLOC_012189
TCONS_00024924 lncRNA upstream 101008 30326532 ~ 30369351 (-) False XLOC_012189
TCONS_00024925 lncRNA upstream 101008 30326532 ~ 30369525 (-) False XLOC_012189
TCONS_00024926 lncRNA upstream 128213 30353737 ~ 30369525 (-) False XLOC_012189
TCONS_00024007 mRNA downstream 249580 29797876 ~ 29902187 (-) False XLOC_012184
TCONS_00024008 mRNA downstream 274431 29798216 ~ 29877336 (-) True XLOC_012184
TCONS_00024003 mRNA downstream 380128 29376854 ~ 29771639 (-) False XLOC_012181
TCONS_00024006 mRNA downstream 415748 29732153 ~ 29736019 (-) True XLOC_012181
TCONS_00024001 mRNA downstream 839261 29282863 ~ 29312506 (-) False XLOC_012180
TCONS_00024012 mRNA upstream 81930 30307454 ~ 30366705 (-) False XLOC_012189
TCONS_00024013 mRNA upstream 244220 30469744 ~ 30473374 (-) False XLOC_012191
TCONS_00024015 mRNA upstream 247983 30473507 ~ 30521043 (-) True XLOC_012192
TCONS_00024016 mRNA upstream 379295 30604819 ~ 30652738 (-) False XLOC_012194
TCONS_00024017 mRNA upstream 379996 30605520 ~ 30635298 (-) False XLOC_012194
TCONS_00024004 other downstream 514446 29637205 ~ 29637321 (-) True XLOC_012182
TCONS_00024000 other downstream 878686 29272963 ~ 29273081 (-) True XLOC_012179
TCONS_00023997 other downstream 926856 29216367 ~ 29224911 (-) True XLOC_012176
TCONS_00023990 other downstream 1340129 28809704 ~ 28811638 (-) True XLOC_012171
TCONS_00023979 other downstream 1527591 28624048 ~ 28624176 (-) True XLOC_012165
TCONS_00024018 other upstream 395896 30621420 ~ 30635295 (-) True XLOC_012194
TCONS_00024025 other upstream 675248 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024027 other upstream 680190 30905714 ~ 30911622 (-) False XLOC_012199
TCONS_00024055 other upstream 1126671 31352195 ~ 31360599 (-) False XLOC_012207
TCONS_00024057 other upstream 1158910 31384434 ~ 31384548 (-) True XLOC_012208

Expression Profile

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