RNA id: TCONS_00024922


Basic Information

Item Value
RNA id TCONS_00024922
length 695
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_012188
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 30278131 ~ 30280713 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aggaaacccactcgaacccggggagaacatgcaaacagaaatgccaactgaccccgaggccttcttgctgtgaggcgacagaactacctactctGTCACCCTGTCGCCCAACATCATACAGTAGATGAGGACGTCCCGCCGTCAGCGTGCCTCATTCTCTTCTCTTCGTGTTGGCTGAGATCCACGGCAGAGCTGAAGCCAAGACCTGTCTAGAGAGCCCATCAAAAAGCACTCTCTGAGAGGCCACACTCGGAGATCTGCTGCTTCTCTTCTTCATTACTGTAAGTCTCATTATTGCATTGTCTGATAAAAGAACAACAGATTAGAGGAATAGCTCATATAACCACAATTCTGAAAGTATGGGATGTTTTACTCAAATTGATTGAAATCAAgaatctttttttgttattttcttccacttttatttcattgacaaaagtACAAAGATCTGCAGTGTTTTCACTCAGCCACTTCAATGTATTCtgtaaaaatgaatacatttagaaTTGTATTGATTTCACACAATCAAAAGTTGAAACaggcaaaataaaaatgaacagttTATAGAACATCTATATTCAACGTTAGGTTACGTTAAATGTCAGATGGACTTAGATTTTCCTCAGAAACTCGCTGTCACTGCACACAATCTGCCGCAGCATCAAGAAATGCGACTTGAATGTTtgtaacacaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024920 lncRNA downstream 52607 30151767 ~ 30225524 (-) False XLOC_012187
TCONS_00024921 lncRNA downstream 52607 30203624 ~ 30225524 (-) True XLOC_012187
TCONS_00024919 lncRNA downstream 195418 30077331 ~ 30082713 (-) True XLOC_012186
TCONS_00024009 lncRNA downstream 223974 29976009 ~ 30054157 (-) True XLOC_012185
TCONS_00024005 lncRNA downstream 554918 29722085 ~ 29723213 (-) True XLOC_012183
TCONS_00024923 lncRNA upstream 25502 30306215 ~ 30369525 (-) False XLOC_012189
TCONS_00024924 lncRNA upstream 45819 30326532 ~ 30369351 (-) False XLOC_012189
TCONS_00024925 lncRNA upstream 45819 30326532 ~ 30369525 (-) False XLOC_012189
TCONS_00024926 lncRNA upstream 73024 30353737 ~ 30369525 (-) False XLOC_012189
TCONS_00024927 lncRNA upstream 84142 30364855 ~ 30369255 (-) True XLOC_012189
TCONS_00024010 mRNA downstream 72829 30140099 ~ 30205302 (-) False XLOC_012187
TCONS_00024007 mRNA downstream 375944 29797876 ~ 29902187 (-) False XLOC_012184
TCONS_00024008 mRNA downstream 400795 29798216 ~ 29877336 (-) True XLOC_012184
TCONS_00024003 mRNA downstream 506492 29376854 ~ 29771639 (-) False XLOC_012181
TCONS_00024006 mRNA downstream 542112 29732153 ~ 29736019 (-) True XLOC_012181
TCONS_00024012 mRNA upstream 26741 30307454 ~ 30366705 (-) False XLOC_012189
TCONS_00024013 mRNA upstream 189031 30469744 ~ 30473374 (-) False XLOC_012191
TCONS_00024015 mRNA upstream 192794 30473507 ~ 30521043 (-) True XLOC_012192
TCONS_00024016 mRNA upstream 324106 30604819 ~ 30652738 (-) False XLOC_012194
TCONS_00024017 mRNA upstream 324807 30605520 ~ 30635298 (-) False XLOC_012194
TCONS_00024011 other downstream 73602 30176436 ~ 30204529 (-) False XLOC_012187
TCONS_00024004 other downstream 640810 29637205 ~ 29637321 (-) True XLOC_012182
TCONS_00024000 other downstream 1005050 29272963 ~ 29273081 (-) True XLOC_012179
TCONS_00023997 other downstream 1053220 29216367 ~ 29224911 (-) True XLOC_012176
TCONS_00023990 other downstream 1466493 28809704 ~ 28811638 (-) True XLOC_012171
TCONS_00024018 other upstream 340707 30621420 ~ 30635295 (-) True XLOC_012194
TCONS_00024025 other upstream 620059 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024027 other upstream 625001 30905714 ~ 30911622 (-) False XLOC_012199
TCONS_00024055 other upstream 1071482 31352195 ~ 31360599 (-) False XLOC_012207
TCONS_00024057 other upstream 1103721 31384434 ~ 31384548 (-) True XLOC_012208

Expression Profile

//