RNA id: TCONS_00024050


Basic Information

Item Value
RNA id TCONS_00024050
length 736
lncRNA type retained_intron
GC content 0.43
exon number 3
gene id XLOC_012205
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 31214167 ~ 31221774 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACAGTCTTATTCAATCTTGTTCTCAATGCGCTGCGTAATATTAATTTGTACGTTTTACGTTTGACGTTTTAGTCATGCGTTGAGAAAACTGCGTCTAACGTAAAGCCCAGTTTGTTGCGTATACAGTAACGTTAACGCTTTCTTATTTCGCTCTCTATTTGATGTAGGGCGTGCAATATTTAGGTCCGATTCTCACGTTTGTTGACCTGAATCAAGGACTCATGTTGGACGCATCAGCGGTCTGAGGTCCGACAGCAGGCTGTGCTTATTAGGCAATGCAGTCTGTCCTCAGGCTGGCGGCAGTAGCGGTCCCTATGGGTTTGCTGCTCTCCAGAACCATGGCATGGATGTCTAGTGGCAAAACACATGTAGAACTCATCACTCGCTTGAGAGATCATGGAGTCATTCACAACGACAGAGTGTTTAATGCCATGCTTGCCACTGATCGAGGGATTTATTCCAGAGACCACCCGTACGCTGACTCTCCTCAGTCCATAGGTGACTTTCTTATTTCAGCAAACATATTGCTTTGACTGCTTGAAGCAAACTGAAACGAGTGCACGACCATTTttcatttaaacaactttttgttttgttttgtgcaaaGGATACAAGGCTACAATCAGTGCCCCTCATATGGTAGGTCAGAAAAACACATGTAAAAATAGATGTTATTGTCAATTATTATGCATTACAATGAATGGTTTGTTGTGTAGCATGCACATGCTCTTGAGG

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1738 Predicted to enable protein-L-isoaspartate (D-aspartate) O-methyltransferase activity. Predicted to act upstream of or within cellular protein modification process and methylation. Predicted to be active in cytoplasm. Orthologous to human PCMT1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase).

Ensembl:

ensembl_id ENSDART00000134833

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024044 lncRNA downstream 33639 31182644 ~ 31185243 (-) False XLOC_012203
TCONS_00024043 lncRNA downstream 33639 31182644 ~ 31185243 (-) False XLOC_012203
TCONS_00024042 lncRNA downstream 33639 31182644 ~ 31185243 (-) True XLOC_012203
TCONS_00024041 lncRNA downstream 35006 31181950 ~ 31183876 (-) False XLOC_012203
TCONS_00024039 lncRNA downstream 121341 31096326 ~ 31097541 (-) True XLOC_012201
TCONS_00024054 lncRNA upstream 128175 31349711 ~ 31352247 (-) False XLOC_012207
TCONS_00024933 lncRNA upstream 128175 31349711 ~ 31360599 (-) False XLOC_012207
TCONS_00024063 lncRNA upstream 387004 31608540 ~ 31611613 (-) True XLOC_012211
TCONS_00024070 lncRNA upstream 480805 31702341 ~ 31705509 (-) True XLOC_012215
TCONS_00024934 lncRNA upstream 906361 32127897 ~ 32135852 (-) False XLOC_012218
TCONS_00024045 mRNA downstream 6462 31205064 ~ 31212420 (-) True XLOC_012204
TCONS_00024040 mRNA downstream 54663 31151215 ~ 31164219 (-) True XLOC_012202
TCONS_00024036 mRNA downstream 159910 30999720 ~ 31058972 (-) False XLOC_012200
TCONS_00024038 mRNA downstream 159982 31020318 ~ 31058900 (-) True XLOC_012200
TCONS_00024033 mRNA downstream 160218 30979022 ~ 31058664 (-) False XLOC_012200
TCONS_00024051 mRNA upstream 54901 31276437 ~ 31344400 (-) False XLOC_012206
TCONS_00024052 mRNA upstream 57449 31278985 ~ 31308658 (-) True XLOC_012206
TCONS_00024053 mRNA upstream 125024 31346560 ~ 31360951 (-) False XLOC_012207
TCONS_00024056 mRNA upstream 133980 31355516 ~ 31360956 (-) True XLOC_012207
TCONS_00024058 mRNA upstream 179048 31400584 ~ 31483469 (-) False XLOC_012209
TCONS_00024027 other downstream 307260 30905714 ~ 30911622 (-) False XLOC_012199
TCONS_00024025 other downstream 317010 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024018 other downstream 583587 30621420 ~ 30635295 (-) True XLOC_012194
TCONS_00024011 other downstream 1014353 30176436 ~ 30204529 (-) False XLOC_012187
TCONS_00024004 other downstream 1581561 29637205 ~ 29637321 (-) True XLOC_012182
TCONS_00024055 other upstream 130659 31352195 ~ 31360599 (-) False XLOC_012207
TCONS_00024057 other upstream 162898 31384434 ~ 31384548 (-) True XLOC_012208
TCONS_00024073 other upstream 1024593 32246129 ~ 32246255 (-) True XLOC_012219
TCONS_00024076 other upstream 1169520 32391056 ~ 32401688 (-) False XLOC_012221
TCONS_00024082 other upstream 1201898 32423434 ~ 32426104 (-) True XLOC_012221

Expression Profile

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