RNA id: TCONS_00024110


Basic Information

Item Value
RNA id TCONS_00024110
length 393
lncRNA type antisense
GC content 0.46
exon number 2
gene id XLOC_012233
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33418262 ~ 33460893 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTATATGCATGGCTTTGTCCAAATTCATCCCCAACTGAAGCCACACCGGACACGTCTTGATCAGTTTCTCTAGTATGCTGATTCCAGGAGGCACAGATGACAGGCGTACCTCATCTGTAACTTGGTTGGCTCTCATTGTGATATCTTCTACTGTCATGTCGGCCATCTTGCTGGTGTCCAAGTTCGCCTCTCCTCCTGTGACCTTAAGTTCCACGCTCTGGGGTCTGAAGGCAAAGGTCAAAGTTTAGAGGCCATTGAATCAAACACAAACGAAGATGCCCACAGAAAAAGCTTTCCCTACTACCTGGAATCTGAAGGAATTCTGTCATCGTTACCCAGCCTGATGttcatcaaataaaatgtttaatgtgaAGCTCTGGAGAGGACTATAA

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0071696 ectodermal placode development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0014706 striated muscle tissue development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000157227

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024107 lncRNA downstream 3428 33409586 ~ 33414834 (-) False XLOC_012232
TCONS_00024098 lncRNA downstream 186548 33206780 ~ 33231714 (-) False XLOC_012230
TCONS_00024541 lncRNA downstream 208762 33206954 ~ 33209500 (-) True XLOC_012230
TCONS_00024938 lncRNA downstream 255784 33145594 ~ 33162478 (-) True XLOC_012229
TCONS_00024937 lncRNA downstream 279886 33133819 ~ 33138376 (-) True XLOC_012228
TCONS_00024940 lncRNA upstream 108440 33564882 ~ 33571806 (-) False XLOC_012235
TCONS_00024542 lncRNA upstream 109284 33565726 ~ 33570319 (-) False XLOC_012235
TCONS_00024941 lncRNA upstream 113151 33569593 ~ 33571801 (-) True XLOC_012235
TCONS_00024942 lncRNA upstream 1204956 34661398 ~ 34691529 (-) False XLOC_012237
TCONS_00024543 lncRNA upstream 1229962 34686404 ~ 34691556 (-) True XLOC_012237
TCONS_00024109 mRNA downstream 2242 33412220 ~ 33416020 (-) True XLOC_012232
TCONS_00024106 mRNA downstream 2522 33409565 ~ 33415740 (-) False XLOC_012232
TCONS_00024105 mRNA downstream 3434 33409038 ~ 33414828 (-) False XLOC_012232
TCONS_00024108 mRNA downstream 3481 33411959 ~ 33414781 (-) False XLOC_012232
TCONS_00024104 mRNA downstream 5394 33404931 ~ 33412868 (-) False XLOC_012232
TCONS_00024111 mRNA upstream 45324 33501766 ~ 33552363 (-) True XLOC_012234
TCONS_00024112 mRNA upstream 231778 33688220 ~ 33707589 (-) False XLOC_012236
TCONS_00024115 mRNA upstream 252240 33708682 ~ 33716688 (-) False XLOC_012236
TCONS_00024116 mRNA upstream 253249 33709691 ~ 33714636 (-) True XLOC_012236
TCONS_00024118 mRNA upstream 1353201 34809643 ~ 34963575 (-) False XLOC_012239
TCONS_00024101 other downstream 178976 33238317 ~ 33239286 (-) True XLOC_012231
TCONS_00024095 other downstream 638820 32774917 ~ 32779442 (-) True XLOC_012226
TCONS_00024093 other downstream 664978 32750175 ~ 32753284 (-) False XLOC_012226
TCONS_00024092 other downstream 665357 32746392 ~ 32752905 (-) False XLOC_012226
TCONS_00024082 other downstream 992158 32423434 ~ 32426104 (-) True XLOC_012221
TCONS_00024113 other upstream 235256 33691698 ~ 33705464 (-) False XLOC_012236
TCONS_00024114 other upstream 242937 33699379 ~ 33713177 (-) False XLOC_012236
TCONS_00024124 other upstream 1772146 35228588 ~ 35238312 (-) True XLOC_012241
TCONS_00024130 other upstream 2161544 35617986 ~ 35618104 (-) True XLOC_012246
TCONS_00024140 other upstream 3178630 36635072 ~ 36635189 (-) True XLOC_012252

Expression Profile

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