RNA id: TCONS_00024116


Basic Information

Item Value
RNA id TCONS_00024116
length 579
RNA type mRNA
GC content 0.41
exon number 8
gene id XLOC_012236
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33688220 ~ 33716688 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCAAAAGCAACAACTATTAAAGAGGCCCTGGTGAAATGGgaGGAAAAAACTGGTGAAAAAGCAAATGATGCCACGGCAGTAAAGCTTTATGGTCAAATCCCTCCCATTGAAAAAATGGATGCATCTCTCTCTAATCTTGTCAACTGCGAGAGATTGTCCTTGTCTACAAACTGCATTGAAAAAATTGCCAACTTAAATGGTCTAAAAAACCTTAAGATATTGTCCTTGGGGCGGAATAACATCAAAAACCTCAATGGACTCGAGGCAGTGGGTGATACTCTGGAGGAGCTGTGGATCTCTTATAACCTCATAGAAAAACTGAAGGGAATTCATGTCATGAAGAAACTTAAAGTCTTATACATGTCCAACAACTTGGTGAAGGAGTGGGGGGAGTTTCTGAAACTGGCAGATCTTCCATCACTGGTTGACCTTGTCTTTGTGGGAAACCCATTAGAAGAAAAATATTCTGCAGATGGCAACTGGATAGAGGAGGCTACAAAGAGACTTCCCAAACTCAAAAAGCTAGATGggAATCCTGTCATCAAACAAGAGGAGGAAACTGAAGGGGAGagttaa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-178 Predicted to enable alpha-tubulin binding activity and dynein heavy chain binding activity. Predicted to be involved in outer dynein arm assembly. Predicted to be located in cell projection and microtubule. Predicted to be part of dynein complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 16. Orthologous to human DNAL1 (dynein axonemal light chain 1).

Ensembl:

ensembl_id ENSDART00000188500

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024940 lncRNA downstream 137885 33564882 ~ 33571806 (-) False XLOC_012235
TCONS_00024941 lncRNA downstream 137890 33569593 ~ 33571801 (-) True XLOC_012235
TCONS_00024542 lncRNA downstream 139372 33565726 ~ 33570319 (-) False XLOC_012235
TCONS_00024939 lncRNA downstream 248798 33455995 ~ 33460893 (-) True XLOC_012233
TCONS_00024110 lncRNA downstream 253249 33418262 ~ 33456442 (-) False XLOC_012233
TCONS_00024942 lncRNA upstream 946762 34661398 ~ 34691529 (-) False XLOC_012237
TCONS_00024543 lncRNA upstream 971768 34686404 ~ 34691556 (-) True XLOC_012237
TCONS_00024943 lncRNA upstream 992143 34706779 ~ 34800320 (-) False XLOC_012238
TCONS_00024117 lncRNA upstream 992143 34706779 ~ 34805758 (-) False XLOC_012238
TCONS_00024944 lncRNA upstream 1026520 34741156 ~ 34805738 (-) False XLOC_012238
TCONS_00024112 mRNA downstream 2102 33688220 ~ 33707589 (-) False XLOC_012236
TCONS_00024111 mRNA downstream 157328 33501766 ~ 33552363 (-) True XLOC_012234
TCONS_00024109 mRNA downstream 293671 33412220 ~ 33416020 (-) True XLOC_012232
TCONS_00024106 mRNA downstream 293951 33409565 ~ 33415740 (-) False XLOC_012232
TCONS_00024118 mRNA upstream 1095007 34809643 ~ 34963575 (-) False XLOC_012239
TCONS_00024119 mRNA upstream 1099661 34814297 ~ 34952562 (-) False XLOC_012239
TCONS_00024120 mRNA upstream 1114935 34829571 ~ 34853229 (-) True XLOC_012239
TCONS_00024121 mRNA upstream 1254487 34969123 ~ 35076730 (-) False XLOC_012240
TCONS_00024123 mRNA upstream 1510978 35225614 ~ 35238359 (-) False XLOC_012241
TCONS_00024113 other downstream 4227 33691698 ~ 33705464 (-) False XLOC_012236
TCONS_00024101 other downstream 470405 33238317 ~ 33239286 (-) True XLOC_012231
TCONS_00024095 other downstream 930249 32774917 ~ 32779442 (-) True XLOC_012226
TCONS_00024093 other downstream 956407 32750175 ~ 32753284 (-) False XLOC_012226
TCONS_00024092 other downstream 956786 32746392 ~ 32752905 (-) False XLOC_012226
TCONS_00024124 other upstream 1513952 35228588 ~ 35238312 (-) True XLOC_012241
TCONS_00024130 other upstream 1903350 35617986 ~ 35618104 (-) True XLOC_012246
TCONS_00024140 other upstream 2920436 36635072 ~ 36635189 (-) True XLOC_012252
TCONS_00024159 other upstream 3235802 36950438 ~ 36950555 (-) True XLOC_012260
TCONS_00024168 other upstream 3594693 37309329 ~ 37309446 (-) True XLOC_012265

Expression Profile

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