RNA id: TCONS_00024943


Basic Information

Item Value
RNA id TCONS_00024943
length 746
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id XLOC_012238
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 34706779 ~ 34805758 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAATAGTTGGAGAGCATGTCAGACAAGTGAGGAGTCTGGGGTTTTGTGTAAAGTTTTTCTCTCACGGTCCGAACGCTATTTCTGTGTTGTGGTAGCAGCATGGCTCTGCATGCACCAGCGCTGAAGAAAGATATCATGGCGGTGTGCCAATATTTCATGTGGGCCGGGGATTACATTCAACAGacAACAAAGTCTTGCAGGTCTTGCAATggcatgagaactcgaaccctgtcattgtggtcttctctctgcatctcaagttctcagatgtacatggcaagctactggacaaactggtaacagcgggaaagctggaGATAAGCAGTCAGTTGGTCAGCATGAAAAGGAACGATGTCACACCACCCTTTTTTAAAGAGGAAATGCAGCATAACACAATTCTGGCTATACATAATTTGCCATGTTTTGCCATTTTTAAGGcgatgggtttactcactttttttaagtaaagtcaagtaTAATCACTTTTTGCAGTGTAGCTGTTTTTCAAATGTACTGCATGACCGCTAGAACAGAATGTTCTATATAATATGAATGTGGATAGTATAAATGGAACTCACCAACATTTGTCATTACCTATAAgcacaaagaaataaaatcatttacTTTAGACATCAGTTTGTGAAGAAAGTGACTGTGAAAGTTTTGGCTATAAAATGACTCCTGACATTTTCCAATGTTGATTACCTTATTcttctattaaaataataaagctccggtttccccc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024543 lncRNA downstream 15223 34686404 ~ 34691556 (-) True XLOC_012237
TCONS_00024942 lncRNA downstream 15250 34661398 ~ 34691529 (-) False XLOC_012237
TCONS_00024940 lncRNA downstream 1134973 33564882 ~ 33571806 (-) False XLOC_012235
TCONS_00024941 lncRNA downstream 1134978 33569593 ~ 33571801 (-) True XLOC_012235
TCONS_00024542 lncRNA downstream 1136460 33565726 ~ 33570319 (-) False XLOC_012235
TCONS_00024122 lncRNA upstream 198651 34998971 ~ 35076730 (-) True XLOC_012240
TCONS_00024129 lncRNA upstream 754251 35554571 ~ 35589737 (-) False XLOC_012245
TCONS_00024946 lncRNA upstream 786743 35587063 ~ 35846256 (-) False XLOC_012245
TCONS_00024544 lncRNA upstream 906190 35706510 ~ 35736110 (-) True XLOC_012245
TCONS_00024545 lncRNA upstream 1079774 35880094 ~ 35881841 (-) False XLOC_012247
TCONS_00024115 mRNA downstream 990091 33708682 ~ 33716688 (-) False XLOC_012236
TCONS_00024116 mRNA downstream 992143 33709691 ~ 33714636 (-) True XLOC_012236
TCONS_00024112 mRNA downstream 999190 33688220 ~ 33707589 (-) False XLOC_012236
TCONS_00024111 mRNA downstream 1154416 33501766 ~ 33552363 (-) True XLOC_012234
TCONS_00024109 mRNA downstream 1290759 33412220 ~ 33416020 (-) True XLOC_012232
TCONS_00024118 mRNA upstream 9323 34809643 ~ 34963575 (-) False XLOC_012239
TCONS_00024119 mRNA upstream 13977 34814297 ~ 34952562 (-) False XLOC_012239
TCONS_00024120 mRNA upstream 29251 34829571 ~ 34853229 (-) True XLOC_012239
TCONS_00024121 mRNA upstream 168803 34969123 ~ 35076730 (-) False XLOC_012240
TCONS_00024123 mRNA upstream 425294 35225614 ~ 35238359 (-) False XLOC_012241
TCONS_00024114 other downstream 993602 33699379 ~ 33713177 (-) False XLOC_012236
TCONS_00024113 other downstream 1001315 33691698 ~ 33705464 (-) False XLOC_012236
TCONS_00024101 other downstream 1467493 33238317 ~ 33239286 (-) True XLOC_012231
TCONS_00024095 other downstream 1927337 32774917 ~ 32779442 (-) True XLOC_012226
TCONS_00024093 other downstream 1953495 32750175 ~ 32753284 (-) False XLOC_012226
TCONS_00024124 other upstream 428268 35228588 ~ 35238312 (-) True XLOC_012241
TCONS_00024130 other upstream 817666 35617986 ~ 35618104 (-) True XLOC_012246
TCONS_00024140 other upstream 1834752 36635072 ~ 36635189 (-) True XLOC_012252
TCONS_00024159 other upstream 2150118 36950438 ~ 36950555 (-) True XLOC_012260
TCONS_00024168 other upstream 2509009 37309329 ~ 37309446 (-) True XLOC_012265

Expression Profile

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