RNA id: XM_021602630.2


Basic Information

Item Value
RNA id XM_021602630.2
length 1540
RNA type mRNA
GC content 0.48
exon number 10
gene id nit2
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 602103 ~ 617595 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttgtggctgtggtaactagtgacaaacGTTCCACAGAAAGACGGGCGCAATCGGTCGGAGCCACTGAGGTATAATAAGAACCGTCGTGCTAATGACATACAATTAATAATAGTGGTATCTGCTGGTCGGTTGGGCTTACCAGCTACATATGCGCATAAACTGAACTAAAACAAAATACCTTTATTTTGAAAAGATGTCCAGCATAGACCCGGAAGAAGAGATGTTTTTCACGTTCATATTATGAGAACACGAATCCTGCAAACTGCTGCAAGCATTAATGTCTCTATTGGCCAAGACAATGTCTAAGTTCCGTCTAGCAGTGGTCCAGCTACATGTGACAAAGGTCAAAGCTGACAACCTCTCCAGAGCCCGGGGGCTGATCAAAGAAGCAGCTGCACGGGGGGCCAAATTGGTGGTCTTACCTGAGTGCTTCAACTCCCCCTATGGAACTGGCTTCTTCCCTGAGTATGCAGAGAAGATCCCAGGAGAATCCAGTCAGGTTCTGTCTGAGGCAGCCAAGGAGAGCCAGGTGTATCTGGTGGGAGGCTCCATCCCTgaggaggatgatggagggaagCTGTATAACACCTGTCCAGTGTTTGGACCTGATGGCAGCCTGGTGCTCAAACACAGGAAGATCCACCTCTTTGACATCGACGTTCCAGGGAAGATCCGTTTCCAGGAGTCAGAGACACTGAGCCCAGGGAGCAACCTGTCAGTGTTTGACACGCCATACTGTAGGGTGGGTGTAGGGATCTGCTATGACATAAGGTTTGCAGAGCTGGCCCAACTCTACTCTAAGAAAGGATGCCAGCTGTTGGTCTACCCTGGAGCCTTCAACATGACCACCGGGCCAGCCCACTGGGAACTGCTGCAGAGAGGAAGAGCGGTTGATAACCAGGTGTACGTGGCCACGGCTTCCCCTGCCAGAGATGAGACAGCCTCCTACGTGGCCTGGGGTCACAGCACTGTTGTTAGTCCCTGGGGAGAGGTGATATCTAAGGCGGGGTCTGAAGAGACTGTTGTTTACGCAGACATTGACCTGCAGTATTTGGCCAACGTTCGTCAACAGATCCCCATCACAGCCCAACGCCGCAGTGATCTCTACACTGTGAACGCAGTGCAGGAGGGATGACCTTTAACCCCTGAACCCTTAGCTATGAGAAACTGAGGCAATCAGGAGTTACAGTAAACAGACCTGTCTATTCTTGGTGAGAAATTGATAGCTGGAGAATGAGTGTTGGCTACACAGCTGTTTGTGCCTACAATACATGACTCCACTGTGACCTACAGTGGAGTAACAGTAGCAGCTGTGGAACCAGTAAATGTAGTCTGATTTTGAAGGTGCATGTAATAAAGCAGAATATCTTCGATGGAACCATTTTACACAAAGAGGATGTATGTCCTCTCTAATTTACACAAAGAGGATGAATGTCATCTCTAATTTAAACAAAGATTTATATTCTTAGTATAACATGTCTCATCTGTTTTCAAATCTACATCCAGTTCAATTAAATTCATTTTTTCCAAGAAATACT

Function

GO:

id name namespace
GO:0006807 nitrogen compound metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0050152 omega-amidase activity molecular_function

KEGG:

id description
K13566 NIT2, yafV; omega-amidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501 lncRNA upstream 44509 557387 ~ 557594 (+) True G420
TU480 lncRNA upstream 127522 474223 ~ 474581 (+) True G399
TU470 lncRNA upstream 135575 464887 ~ 466528 (+) True G391
TU475 lncRNA upstream 138085 463502 ~ 464018 (+) True G396
TU453 lncRNA upstream 166308 435513 ~ 435795 (+) True G376
TU541 lncRNA downstream 14371 631966 ~ 633986 (+) True G456
TU549 lncRNA downstream 32143 649738 ~ 655342 (+) True G464
TU553 lncRNA downstream 33484 651079 ~ 653450 (+) True G465
TU468 lncRNA downstream 43941 661536 ~ 662909 (+) True G389
TU555 lncRNA downstream 48580 666175 ~ 671266 (+) True G467
XM_036977160.1 mRNA upstream 104975 439965 ~ 497128 (+) False tbc1d23
XM_036977245.1 mRNA upstream 104975 439966 ~ 497128 (+) False tbc1d23
XM_036977209.1 mRNA upstream 104975 439967 ~ 497128 (+) False tbc1d23
XM_036977292.1 mRNA upstream 104975 439968 ~ 497128 (+) True tbc1d23
XM_036977095.1 mRNA upstream 180870 384207 ~ 421233 (+) True LOC110532027
XM_036977980.1 mRNA downstream 164245 781840 ~ 972109 (+) False slc9a7
XM_036978058.1 mRNA downstream 471801 1089396 ~ 1133908 (+) True tubgcp5
XM_036978346.1 mRNA downstream 556116 1173711 ~ 1298805 (+) False cyfip1
XM_036978398.1 mRNA downstream 556116 1173711 ~ 1299204 (+) False cyfip1
XM_036978300.1 mRNA downstream 556116 1173711 ~ 1299441 (+) False cyfip1
TU206 other upstream 282129 318047 ~ 319974 (+) False G166
TU83 other upstream 471840 120466 ~ 130263 (+) True G51
TU80 other upstream 481796 112959 ~ 120307 (+) True G50
TU55 other upstream 508385 56555 ~ 93718 (+) True G26
TU47 other upstream 529804 52711 ~ 72299 (+) True G19
TU707 other downstream 386188 1003783 ~ 1009153 (+) False G583
TU710 other downstream 386188 1003783 ~ 1010207 (+) False G583
TU1201 other downstream 1461303 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 1461303 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 1461303 2078898 ~ 2079603 (+) True G961

Expression Profile