RNA id: LOC110532690


Basic Information

Item Value
RNA id LOC110532690
length 1863
RNA type mRNA
GC content 0.57
exon number 6
gene id LOC110532690
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8624886 ~ 8634174 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCATGACGACACATTGTATCTCAGTGAAGCAGGCATGCAGAACGAGATCGCCCCACCAAGCCAGATAGATTACTTCCACGTGCAACGGTCAGACGACAAGCAGGTGAGGCACTTCCTGGAGCTGAGCTATGCTGGTGCCATCCTTCGGGACAGCTGGGTCCTGACAGACGTTGGCATCACCCCTAGCAGTGCCATCTGCTGCCTGCTGAAGCGGGAGCCGGTGGTGCGTGTGTTCAGTGCCGTGAAGGGGGAGACCCTCTCAGTCTTGGGCACTGTGTTTCTCCTGAGTACGTCTGTGGCCAGGCTCATGACCCTGGTGTCCCAGCAGTGTGGGCTTCCCGTCAGCTCCTTCAGACTGAGCTCTCCCACCGGCCTGCAACTCTACGACTGCAACCGGCTGCACGACTACGCCATTGACCTGGGGGCTACTCTACGGTTGGACACCTGGGATGGGTGGGCGGAGTTCCTCAGAGGCTGCTTCCTGGGACACAGACTGTCCAACGACACCTGTCTAGGGAGAGACCTGTGAGGAGGTTCCAGCTCCGGGTGGCACTCTACATCGCTGCTTCTCTGGGCCACCTGGACCTGGCCGGCTGGCTGCTGGAGAGGGGGGTGCGTGTCATTGAGCCGGTGGGGGTTCACCCTTACCGTGAGTGGTGCCACCAGACGGCCCACCCCGACGTCGCCAAGTGTCCCGCTGTCGCCTCCATCGAGCGCGGCCAGCTCACCATCCTCAAACTCTTTATTGCCAGCAGCGTTCTGACCCTTGCCTGTCGGGATCCCCAGGGTCGCGACCCCCTGAGGATCGCCCTTCAATACGGCCACAGGGAGTGTGTGAGTCACCTGGCCACCAAGCTGTGCTCTGTGGTGGTCCTCCCAGGTATGGCCCTGCCCATGCGGACATACCTCCAGATAAAGGGCTGGGTGAGGCTGGGGCAGAGGAGGGCAGCATCCAGGCACTGCATGGGCCTAAACAGGGCTCCGTTCAGGACCAGGGTGGGCGACACGGTCCTGGTGGACGGCTTCACCCTCCCCAAGATGTCCTCCAAGCCCAGGAGGAGTGAGGCCAAGGCGGGTATCAGGGTGATGTCCACTTCCTCTCGACGTTTGACCCCCATCAACTGCCCATCTCATGTATCCTGCCCGCTCCGCGCCCTGGCATCCCAGGATAAACCTCTTCAACTACCGAAGCTACACCCTGTGGCCacgagggatgaaagagagaagaagaggggatggGAAGGGATGTTAGGAGGATGAGAGTGGGGATCAGAACAGCAACCAATGGAGGAGCAGAGTCCCGCTCCCGCCCATTTCCAGAGACACCAATCTCAGACCTGTGTTTGCCTCGCCAAACTCCGCCCAGATACTCACCACCTCACTGGAGGCCTTTTCTCTCCACTGCGACCGCACACCCAGAGAAAACGCCATATACTGTTTGGCCTTGGCCAGTGCCTTCACACAGAGACCATGGTTGCAGCAGCTGAATGTAGCGCGGACTCTGTCCAGGAGGAGTGCTCAGCACATTGGGTAGACACCAGGATCCTGGTCATTAGGCAGATTAAACATACTGAAACAAGGAGGGACAACCTGGAATTGTCCAAAAAGGAACtcttatttaatttttatttttttattttttacagtgaaCAAGATGAGACTTTGGAACGGATGATGCCTGAAACAATGCGGACAACTTAGAATTTCGTTCCTTTTGATGAGGCTTATAGATATagtctttgcctgtttgatggttagtctgagggcatagcaggattacatataagtgtctggattagtgtcccgctccttgaaagaagcagctctagcctttagcgcggtgtggatgttgcctgtaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9084 lncRNA upstream 3962 8620570 ~ 8620924 (+) True G7396
TU9077 lncRNA upstream 13157 8611349 ~ 8611729 (+) True LOC110515166
TU9075 lncRNA upstream 14036 8610502 ~ 8610850 (+) True G7387
TU9071 lncRNA upstream 17915 8606748 ~ 8606971 (+) True G7383
TU8676 lncRNA upstream 129045 8495735 ~ 8495841 (+) True G7047
TU9113 lncRNA downstream 77340 8711514 ~ 8768048 (+) True G7414
TU9119 lncRNA downstream 88709 8722883 ~ 8723224 (+) True G7417
TU9139 lncRNA downstream 122297 8756471 ~ 8808166 (+) True G7436
TU9143 lncRNA downstream 134350 8768524 ~ 8797364 (+) True G7440
TU9164 lncRNA downstream 165316 8799490 ~ 8831380 (+) True LOC118966103
XM_036989292.1 mRNA upstream 12219 8602725 ~ 8612667 (+) False LOC110515166
XM_036987202.1 mRNA upstream 130542 8486654 ~ 8494344 (+) True LOC110529807
XM_036989291.1 mRNA upstream 353154 8255873 ~ 8271732 (+) False LOC110505168
XM_036989290.1 mRNA upstream 393320 8229189 ~ 8231566 (+) False LOC110501328
XR_005039281.1 mRNA upstream 399619 8224365 ~ 8225267 (+) True LOC118943893
XM_036988195.1 mRNA downstream 32995 8667169 ~ 8674156 (+) False LOC110519734
XM_036988230.1 mRNA downstream 32996 8667170 ~ 8693760 (+) True LOC110519734
XM_036987965.1 mRNA downstream 87396 8721570 ~ 8747704 (+) False LOC118936489
XM_036988014.1 mRNA downstream 101415 8735589 ~ 8747704 (+) True LOC118936489
XM_036989294.1 mRNA downstream 130815 8764989 ~ 8771138 (+) True LOC110510915
TU8596 other upstream 369008 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 394651 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 587732 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 738979 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 899277 7725046 ~ 7725609 (+) True G6434
TU9946 other downstream 824774 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 1349601 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 1351208 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 1507070 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 2842490 11476664 ~ 11514382 (+) True LOC110523899

Expression Profile