RNA id: XM_036989294.1



Basic Information


Item Value
RNA id XM_036989294.1
length 1209
RNA type mRNA
GC content 0.61
exon number 5
gene id LOC110510915
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8764989 ~ 8771138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGAGGGTCTTCATCGCCTTCGATGGTTCCTGTGAGCCTTTTGACGTCTCTCCTGACCAGACCGTGGGGAGCGTAAAACTGATGGTCAAGGATTACTTCCACTTGCAACTGTCAGACGACAAGCAGGTGAGGCACTTCCTGGAGCTGAGCTATGCTGGTGCCATCCTTCGGGACAACTGGGTCCTGACAGACGTTGGCATCACCCCTAGCAGTGCCATCTGCTGCCTGCTGAAGCGGGAGCCGGTGGTGCGTGTGTTCAGTGCCGTGACGGGGGAGACCCTCTCAGTCTTGGGCACTGTGTTTCTCCTGAGTACGTCTGTGGCCAGGCTCATGACCCTGGTGTCCCAGCAGTGTGTGCTTCCCGTCAGCTCCTTCAGACTGAGCTCTCCCACCGGCCTGCAACTCTACGACTGCAACCGGCTGCACGACTACGCCATTGACCTGGgggcTACTCTACGGTTAGACACCTGGGATGGGTGGGCGGAGTTCCTCAGAGGCTGCTTCCTGGGACACAGACTGACCGTCCAACGACACCTGTCTAGGGAGAGACCTGTGATGAGGTTCCAGCTCCGGGTGGCACTCTACATCGCTGCTTCTCTGGGCCACCTGGACTTGGCCGGCTGGCTGCTGGAGAGGGGGGTGCGTGTCATTGAGCCGGTGGGGGTTCACCCTTACCGTGAGTGGTGCCACCAGACGGCCCACCCCGACGTCGCCAAGGTTCCCGCTGTCGCCTCCATCAAGCGCGGCCAGCTCACCATCCTCAAACTCTTTATCGCCAGCAGCGTTCTGACCCTTGACCCTGGGGATCCCGACAGGCGTGACCCCCTGAGGATCGCCCTCCAGTACGGCCACAGAGAGTGTGTGCGTCACCTGGCCACCAAGCTGTGCTCTGTGGTGGTCCTCCCAGGTATGGCCCTGCCCATGCGGACATACCTCCAGATAAAGGGCTGGGTGAGGCTGGGGCAGAGGAGGGCAGCATCCAGGCACTGCATGGGCCTCAACAGGGCTCCGTTCAGGACCAGGGTGGGCGACACGGTCCTGGTGGACGGCTTCACCCTCCCCAAGATGTCCTCCAAGCCCAAGAGGATTGAGGCCAAGGTTGGTATCAGGGTGATGTCCACAGCCTCTCGACGTTTGACCCCCATCAACTGCCCATCTCATGTATCCTGCCCGCTCCGCGCCCTGGCATCCCGGGATAAACCTCTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU9119 lncRNA upstream 41765 8722883 ~ 8723224 (+) True G7417
TU9085 lncRNA upstream 88974 8620933 ~ 8676015 (+) True G7397
TU9084 lncRNA upstream 144065 8620570 ~ 8620924 (+) True G7396
TU9077 lncRNA upstream 153260 8611349 ~ 8611729 (+) True LOC110515166
TU9075 lncRNA upstream 154139 8610502 ~ 8610850 (+) True G7387
TU9164 lncRNA downstream 28352 8799490 ~ 8831380 (+) True LOC118966103
TU9300 lncRNA downstream 93043 8864181 ~ 8865177 (+) True G7573
TU9312 lncRNA downstream 103643 8874781 ~ 8877527 (+) True G7581
TU9478 lncRNA downstream 359466 9130604 ~ 9130845 (+) True G7740
TU9495 lncRNA downstream 382400 9153538 ~ 9153843 (+) True G7757
XM_036987965.1 mRNA upstream 17285 8721570 ~ 8747704 (+) False LOC118936489
XM_036988014.1 mRNA upstream 17285 8735589 ~ 8747704 (+) True LOC118936489
XM_036988230.1 mRNA upstream 71229 8667170 ~ 8693760 (+) True LOC110519734
XM_036988195.1 mRNA upstream 90833 8667169 ~ 8674156 (+) False LOC110519734
LOC110532690 mRNA upstream 130815 8624886 ~ 8634174 (+) True LOC110532690
XM_036989295.1 mRNA downstream 19093 8790231 ~ 8798967 (+) True LOC118966266
LOC118966103 mRNA downstream 28320 8799458 ~ 8851372 (+) False LOC118966103
XM_021615003.2 mRNA downstream 96972 8868110 ~ 8871284 (+) True ndufb5
XM_036989225.1 mRNA downstream 106453 8877591 ~ 8915400 (+) False usp13
XM_036989170.1 mRNA downstream 106455 8877593 ~ 8915400 (+) False usp13
TU8596 other upstream 509111 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 534754 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 727835 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 879082 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 1039380 7725046 ~ 7725609 (+) True G6434
TU9946 other downstream 687810 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 1212637 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 1214244 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 1370106 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 2705526 11476664 ~ 11514382 (+) True LOC110523899

Expression Profile