RNA id: XM_021615003.2



Basic Information


Item Value
RNA id XM_021615003.2
length 814
RNA type mRNA
GC content 0.47
exon number 7
gene id ndufb5
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8868110 ~ 8871284 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTCCAGGCAATACTATGATTCCgtcctcctcaattaaggtgccaccaacctcctgtggtgtacaTAAATATGGCTGCTTCGACTCTACATGGTCGAGCCAATCACAGAGGCGTCTGCCAATCTGCTTGCCCTCAGTAGCGATGGTGGGCATGAGTGTTCTTCGGTCTGCCGCTGCTTTTGCAGCCAGGCTAAATCCTCTAAAATCGGGGAATTCTGTGGTGAATTTGCTCAGCAGAACTGCACAACGCACAGATAAAGTGGCAGTCCGCTGGGGAAGTCATGGGAAGCAGATGTTTATCATCAAGCCCACTGGCTTCTATGACCGGAGGTTTCTGCAGTTATTGAAATTCTATATCCTGCTTACTGGAATCCCAGTTGCGGTCTTTGTGACGTCCGTGAATGTGTTTGTCGgtgagGCTGAGCTGGCTGGAATTCCTGAAGGTTATGAGCCTGAGCATTGGGAGTACTACAAGCATCCTATCACCAGGTGGATCTCACGGACCTTCTATGACTCCCCAGTGAAAGACTATGAGAAAATGATGGCTCTGATCCAGATTGAGTCTGAGAAGGGTGAGATGAGACTGAAACAGCTAGAGGTGCGTAAGCAGATGAGAACGAAGGGAGATGGACCTTGGTTCCACATTGAGACACTGGACAAGAATCTGGTCGACAACAGCATCAAATCAACGCCTGACAATTAAACCAACCGGTCCAACCACCCAGTCTAAACTGTCAGTGCCACGTGTTGATGGCTCACTGTTTGTATATTATTTTCTTCATGACTAAAATAAAGTAAATGTCAatactttgaaa

Function


GO: NA

KEGG:

id description
K03961 NDUFB5; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 5

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU9300 lncRNA upstream 2933 8864181 ~ 8865177 (+) True G7573
TU9164 lncRNA upstream 36730 8799490 ~ 8831380 (+) True LOC118966103
TU9139 lncRNA upstream 59944 8756471 ~ 8808166 (+) True G7436
TU9143 lncRNA upstream 70746 8768524 ~ 8797364 (+) True G7440
TU9113 lncRNA upstream 100062 8711514 ~ 8768048 (+) True G7414
TU9312 lncRNA downstream 3497 8874781 ~ 8877527 (+) True G7581
TU9478 lncRNA downstream 259320 9130604 ~ 9130845 (+) True G7740
TU9495 lncRNA downstream 282254 9153538 ~ 9153843 (+) True G7757
TU9514 lncRNA downstream 324071 9195355 ~ 9195727 (+) True G7776
TU9523 lncRNA downstream 345935 9217219 ~ 9218494 (+) True G7780
LOC118966103 mRNA upstream 16738 8799458 ~ 8851372 (+) False LOC118966103
XM_036989295.1 mRNA upstream 69143 8790231 ~ 8798967 (+) True LOC118966266
XM_036989294.1 mRNA upstream 96972 8764989 ~ 8771138 (+) True LOC110510915
XM_036987965.1 mRNA upstream 120406 8721570 ~ 8747704 (+) False LOC118936489
XM_036988014.1 mRNA upstream 120406 8735589 ~ 8747704 (+) True LOC118936489
XM_036989225.1 mRNA downstream 6307 8877591 ~ 8915400 (+) False usp13
XM_036989170.1 mRNA downstream 6309 8877593 ~ 8915400 (+) False usp13
XM_036989273.1 mRNA downstream 7135 8878419 ~ 8915400 (+) True usp13
XM_021614466.2 mRNA downstream 300684 9171968 ~ 9183082 (+) False LOC110531220
XM_036989375.1 mRNA downstream 300684 9171968 ~ 9183082 (+) False LOC110531220
TU8596 other upstream 612232 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 637875 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 830956 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 982203 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 1142501 7725046 ~ 7725609 (+) True G6434
TU9946 other downstream 587664 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 1112491 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 1114098 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 1269960 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 2605380 11476664 ~ 11514382 (+) True LOC110523899

Expression Profile