RNA id: XM_036989170.1


Basic Information

Item Value
RNA id XM_036989170.1
length 6132
RNA type mRNA
GC content 0.46
exon number 21
gene id usp13
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8877591 ~ 8915400 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTTAATTTGAACAGAGAATGGTCCTCAGAAAACCAGTGAGGGGTGTAGCCATTTGTATGGGTGGTTTTATCAATCAAGTTTGTGGGACCCCTCGTTTGAGTCAAACCGTTCAGTGCGTGACTGCGCCTACGGTAAATACAGCGTTATAATTCTTAAGCAACAGACATACGCAATTGGAAAGAGATTATTGATTACATGTTTATAGAGGATAGCTCTCGCACAAAATAAAAATGACTTCCCCCTCCGTTATGTTTTCAGCGTCATATCCCTCGCCGCTGGAGGAATGTCGAGACCGAATGATTTAAAAATagcatcatctctcctctgacagCCTTCTCTAGTGACTCCCTTAGCATTGTGGTGCGAGAAGCAGGAATGCGAAGATGGCTGCAGATTTAGGAGAGCTGCTTGTCCCTTATATGCCCACCATCAGAGTTCCCAGAGCAGGAGACAGGGTTTTCAAGAGCGAATGTGCCTTTTCCTACGATTCTCCCGAGTCTGAGGGAGGCTTGTATGTGTGTATGAACACATTCCTGGGCTTTGGCAGAGAACATGTGGAGAGACATTACCGTAAAACCGGACAGAGTGTTTACATGCTCCTCAAACGGCATGTCAAAGAGAAAGCCACAGGTGCCGCAGGAGGCGCCATCTCCAGAAGAAGAAATGGCAGAGTGTTCCTAGatTTAGAACTGAACCGTGATTTTAACGGGGATGAGTATGAGTGTGAAGACGAGGCCAAGCTCGTCATATTCCCAGACCACTTCGAGATCCCCTTACCAAATATTGAGGAGTTGCCTGCACTGGTGACAATAGCCTGCGATGCCGCGCTCAACGCAGCGTCAGCCTACAAAAAGCAGGAGTCTGACTCCTGGGACGAGGAGATCCAGGTGTCCAAACACGCCAGGAGTCTCCGACAGCAGGACAACGGAGTGAGGATCCCACCCAGtggTTGGAAATGTCAGAAGTGTGAGATGAGAGAGAACCTGTGGCTGAACCTGACGGACGGAGCGGTGCTTTGTGGGAAGTGGTTCTTCGACGGTGCTGGAGGAAACGGCCACGCCCTGGACCACTACAAAGACACCAACTTCCCTCTGGCAGTCAAACTGGACAACATCACCGCAGATGGAGCAGATATATATTCATTTGATGAAGAAGAAGCAGTCCTGGACCCTCACATATCCGAACACTTGCAACACTTTGGAATAGACATGCTACAGATGCAGCAGaatggaacagaaaaTGGCCACCTCAACACAGAGAGCGTTCGGCCTCGGGTCAGCGAGTGGGAGGTGATCCAGGAGTCGGGCATGAAGCTGAAGGAGGTGTATGGCTCAGGTTTCACGGGCATCAAGAACTTGGGTAACAGCTGCTACCTGGGCACCACCATGCAGGTCCTTTTCAGCATCCCAGAGTTCCAGAGGGCGTATGTTGGAAATCTACAGAGGATCTATGACTACTCACCTCTTGACCCCACCACGGATTTCAGCACACAAATGGCGAAACTGGGCCACGGACTTCTCTCAGGCCTGTACTCCAAACCACCAATGAAATCCGAGCTCATTGAACAGGTGATGAGAGAAGAATACAAGCACCAGTCGAAGGGCATCTCTCCCAAGATGTTCAAAGCCATGGTCAGCAAGGGCCACCCCGAGTTCTCCTCCAACAGACAGCAAGACGCACACGAGTTCTTCCTGCACCTCATCAACCTGGtcgagaGAAACAGTGCTGGCTCAGAGAACCCCAGTGATGTCTTCCGCTACTTGGTGGAGGAGCGTGTGCAGTGCTGCCAGACGCAGAAGGTGTGCTACAACCAGAAGGTGGACTACCTGATGCAGCTCCCGGCCCCCATGGAGGCTGCCTCCAACAGAGagGAGCTGATAGCGTATGAGGCCAAGcgaagagaggcagaggagaacaTGAGAGCCCCTCCAGAGCCTGTGAGGGCCCGGATCCCCTTCACAGCGTGCCTGCAGGCCTTCACAGAGCCAGAGAACGTCCCCGACTTCTGGAGCTCAGCACTGCAGGCCAAGTCAGCTGGAGTCAAGACTTCCCGTTTCGCCTCCTTCCCAGAGTATCTGGTAGTGCAGATTAAGAAATTCACATTTGGGGTTGACTGGGTTCCAAAGAAATTAGATCTGTCCATAGACGTACCAGACTTCCTGGACCTGTCTCGACTCCGGGGCACAGGGCTGCAGGCAGGAGAGGAAGAGCTCCCTGACCTCACCCCCCCAATCGTCCTGCCTGAAGACACCAGAGATGACTCAATGAACTCCTCAGATTCCCCAGATATAGACGAGTCGGCAGCGATGCAGCTGGCGGAGATGGGCTTCCCTCTGGAGGCCTGTCGGAAGGCCGTTTACTACACAGGGAACATGGGCCCTGAAATGGCCTTCAACTGGATCATAGCCCACATGGAGGAGCCTGACTTTGCTGAGCCCCTGGCCCTTCCTTCCTTCATGGAGCCAGGCCCCTCCATGGCCAGCCTGGGCCTGGCAGCCACCCCCCTGGACAACCAGCCTCCGGAGGAGAGCATCGCCATCCTCACGTCCATGGGCTTCCCCCGCCGCCACACAGTCCAGGCCCTCAAAGCCACGAACAACAACTTGGAGAGGGCTCTGGACTGGATCTTCACCCAcccggagagggaggaggaggctaGTGACGACCTTTTGGACATGTCTGACATCATGGAGCCCAACGACAACACCTTCTCCAACGCAAACACGAACAGCCACTCCACGCTGTCCCCAGACCAGGATGCCTCGGGCCCCCGGATCAAAGACGGACCCGGACGTTACGAGCTTTTTGCTTTCATCAGCCACATGGGAGCGTCCACTATGTCTGGTCGTTATGTATGTCATATCAAGAAGGAAGGAAGATGGGTGATCTTCAATGACCATAAAGTGTGTTTGTCAGAAAGGCCTCCAAAAGACTTGGGCTACATCTACTTTTACCGTCGGCTGTCTAGCTGCTAgacctatcccccccccccccccccccccctttaccaTCAGCTGTCTAGCTGCTAGAACCCCCTCCACTCACCCCTCCAACCTTAGAGAACCACAGCCTGGAAAACAGAGGACAACCATGACATCagtggaaaccatggaaacaccTCAGACCAGCCATGAAACAAAGGAACCCACTCAACTCATCCAAGTCACTCAAGAGCAACAGGAAAATGCTTCCATACTTCAAGTGCAGTCAAAAAAAAAGGGAAAGCAATGTGGGTATTTTTTGTATGTCACTGTGAAAATCGTGTGCTTTTGTGTGTTGAAACATGTTATTTTGTCTACGGTGTTGGTACAGAGGGATGTGTGCAATTCTTGTTATTGGAGTGCTCTACACCTATAGTATTAGCCTATCAGATCGTGCTATTCATTTTCTATGCCTTCAGCTACTGTGCCAGTATTTTTATTAATGATGTGCTACGTTTTATAAACGTGGAGCATGGTCCTGAAGTGGTCACACATCACTGCCAGGAACTAAAACTCTCTGAAGCGAAACTCGACAAAAAAATCACAATGCTGCTCAATGCTGCTGGGAGCTTtgcatgtacagatgtaggatcttaatttgaccactgcaggaaaataatcctgtagcaacaggaaatgtgaattgtgtggattataattaatggaaatttttgtaggggttgatacatttttatttaggACAAATCATGATGAAAAAACGCATCATACTGTGTTTTGACAGTTCTAGATCTTGAAAGCTTGATCGCGGAAATACAAAACATTTTGGGAATGTATCAAATGTGGCGTAATGCAACGAATACTAAAACAGTTTTCTTAGTGATATTTTCCTTTAACGTGTGACGCAGGATAGAAACATAATGGCATTGAATGCAGAGAAATTGGCAGCATAAGCAAGTTTCAGAATAAGGAAACACATTTGAAAAAAACGCTCTCGTCTATGATGAACACTTACACATGGGAACCCATGAATATGTAATATCCTTATTGGAGAGTCCGATGTACGTACTGATGGTGTCATAATAGTCACATATCTGTCTGGTTTTGACTTGCAAATGACATCCTGGTTTCTCTGGGATTCAGAGGAGAAACGGTAGCAATTGGACGAATCAAGTTGAGTCAAGTTCATTTAATTTCCCACGAGAACAGAATGTTGTTTTTATTGAAATCTGAAAGCACTTTTCGAACAGATTATTTTATATCCTTGCTTTTAATTAACAGAGAAACAGAGCACTAGCATAGCAGCTACCTTGGCTCAAATACCACAAACTGATATATTCGCTTCTCTTGAATGTGGTAAAAGCCGTGGGCTGAATGTGTTTTATTTTCAGACCATGTTGCGATTTACTCGTACCGTATTCATACCGTTGTTGCTTCACATATAATTCTACACATAAGTGAAACATGCCTTGGATTGCCGTTTTCCTCAGATCAGATTGGCCATGGTGACTAGCAAGGcagaatttttattttatttgaatcctTTAGATAAAAGGCCCACCCCAGTTTTGCATAATATCTAGAAATATTTTGTATACAGTATTCTAAGGAGATCCACTTTTGTTGCTCGCCtaatttgataaaaaaaaattgtggaaGGACAGACAACACACTAACTCATGAGGTAAACTTTTGCTCTTTATGGTAGTCCTTAAATGTTACCTAGTTTTGTATTCATATTCGATACGCCACCATCTTTTTAAATGCAGAATGGTATGCATCTGAACACACCCAACTTGTGTTACGTTATTATTATAGCAATATGCACTGGGATGGAATCTCATGTCTTGAGAATACACCATGTACTGTAGGTTGTGATCTACCGCTTGTTTCAGAATGCGTTCTCGTGCTTTTATGACGTGGTGCAGTCCTGAATGTATTCCTTATGGTGCTCACTGCAACCAAAACCTATCTTCAGCTTTAATGCTCAAATCTATCACATATCAAAGACCTCACTGACGCATAGTCACCAACCCTTGTGTATCTATTGATACTGTATTCACCATTTGCTCAAAGACTCTCTGCTCATGCATCGAGTCACTAGGATGTCTTCTTCTCCTGAGCCTATACAGCCACTCTATCAAAGACAGTTTGTCGGCAGGCGTAGTTGTACAAACAAAGTGTTGCCTACAGTTCATTACATATCGACAAGGTAGTGGAGTGCAATGTTACATATCAAAAATCctctcatattttttttttctttctaagaATAATTACCTGGGACACTAGCCAATCAAAGAATACTTACCTGCGGCACTATCCAAGCAAATAATTGTTACCTGGGGTACTATTCAATCAAATAATACTTACCTGGGGTACTATTCAATCAAATAATACTTACCTGGGGTACTATTCAATCAAATAATACTTACCTGGGGTACTATTCAATCAAATAATACTTACCTGGGGTACTATTCAATCAAATAATACTTACCTGGGGTACTATTCAATCAAATAATACTTACCTGGGGTACTATTCAATCAAAGAATACTTACCTGGGGTACTATTCAATCAAATAATACTTACCTGGGGTACTATTCAATCAAATAATACTTACCTGGGGTACTATTCAATCAAATAATACTTACCTGGGGTACTATTCAATCAAAATACTTACCTGGGGAACTAGCCAATCAAAATACTTACCTGGGGAACTAGCCAATCAAAGAATACTTACCTGGGGCACTATTCAATCAAATAATACTTACCTGGGGAACTAGCCAATCAAAGAATACTTACCTGGGGAACTAGCCAATCAAAGAATACTTACCTGGGGAACTAGCCAATCAAAATACTTACCTGGGGAACTAGCCAATCAAAGAATACTTACCTGGGGAACTAGCCAATCAAAGAATACTTACCTGGGGAACTAGCCAATCAAAGAATACTTACCTGGGGAACTAGCCAATCAAAGAATACTTACCTGGGGAACTAGCCAATCAAAGAATACTTACCTGGGGAACTAGCCAATCAAAGAATACTTACCTGGGGCACTATTCAATCAAAGAATACTTACCTGGGGCACTATTCAATCAAAGAATACTTACCTGGGGAACTAGCCAATCAAATAATACTTACCTGGGGAACTAGCCAATCAAAGAATACTTACCTGGGGAACTAGCCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9312 lncRNA upstream 66 8874781 ~ 8877527 (+) True G7581
TU9300 lncRNA upstream 12416 8864181 ~ 8865177 (+) True G7573
TU9164 lncRNA upstream 46213 8799490 ~ 8831380 (+) True LOC118966103
TU9139 lncRNA upstream 69427 8756471 ~ 8808166 (+) True G7436
TU9478 lncRNA downstream 215204 9130604 ~ 9130845 (+) True G7740
TU9495 lncRNA downstream 238138 9153538 ~ 9153843 (+) True G7757
TU9514 lncRNA downstream 279955 9195355 ~ 9195727 (+) True G7776
TU9523 lncRNA downstream 301819 9217219 ~ 9218494 (+) True G7780
TU9803 lncRNA downstream 316126 9231526 ~ 9231756 (+) True G8000
XM_021615003.2 mRNA upstream 6309 8868110 ~ 8871284 (+) True ndufb5
LOC118966103 mRNA upstream 26221 8799458 ~ 8851372 (+) False LOC118966103
XM_036989295.1 mRNA upstream 78626 8790231 ~ 8798967 (+) True LOC118966266
XM_036989294.1 mRNA upstream 106455 8764989 ~ 8771138 (+) True LOC110510915
XM_036988014.1 mRNA upstream 129889 8735589 ~ 8747704 (+) True LOC118936489
XM_021614466.2 mRNA downstream 256568 9171968 ~ 9183082 (+) False LOC110531220
XM_036989375.1 mRNA downstream 256568 9171968 ~ 9183082 (+) False LOC110531220
XM_036989433.1 mRNA downstream 256568 9171968 ~ 9183082 (+) True LOC110531220
XM_021614393.2 mRNA downstream 303258 9218658 ~ 9221408 (+) True LOC110531147
XM_021614129.2 mRNA downstream 324719 9240119 ~ 9300065 (+) False psmd1
TU8596 other upstream 621715 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 647358 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 840439 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 991686 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 1151984 7725046 ~ 7725609 (+) True G6434
TU9946 other downstream 543548 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 1068375 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 1069982 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 1225844 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 2561264 11476664 ~ 11514382 (+) True LOC110523899

Expression Profile